Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1273 atggcATCCTGCACAGTGGTGTACACCACCACAACACAATCCCTCAACAAAAACTGCTCATTCTCATCAAAATCACATTTGGGATTTCATCATCAGAAACACCTAGTCTTTTACAAGAGGTCAAGCAGCAAAAGAGGCAGCCCATGTGTGATAACATGTGGTGCAGCAGCAGGTGATCAGACACTAGTGATTGGTCTAGCAGCAGATTCAGGATGTGGGAAGAGCACATTCATGAGGAGACTCACAAGTGTGTTTGGAGGAAGAGCAGAACCACCAAAAGGAGGAAACCCAGATTCCAACACTCTCATAAGTGACACAACCACTGTCATATGTTTAGATGATTACCATTCATTGGACAGAAcaggaagaaaagagaaaggtGTCACTGCACTTGATCCTAGAGCCAATGATTTTGATCTCATGTATGAACAAGTTAAGGCCATTAAGGATGGAATTGCTGTTCAGAAACCTATTTATAATCATGTCACTGGTCTCTTGGACCCCCCAGAACTCATCAAGCCTCCCAAAATCTTGGTCATTGAAGGCTTGCATCCAATGTTTGATTCTAGGGTCAGAGAACTATTGGACTTCAGCATCTACTTAGACATTAGCAATGAGGTCAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGACACAGCCTTGAAAGCATCAAAGCTAGTATAGAAGCAAGGAAGCCTGATTTTGATGCTTTTATTGATCCACAAAAGCAATATGCAGATGCAGTAATAGAAGTGTTGCCAACCCAACTGATAGCAGATGATAATGAAGGGAAGGTATTAAGAGTGAGGTTGATACAGAAGGAAGGTGTTAAGCATTTTAGCCCAGTTTACTTGTTCGATGAAGGCTCAACCATTTCTTGGGTGCCATGTGGAAGGAAGCTTACATGTTCTTATCCAGGCATTAAATTCTCCTATGGACCAGAAACATACTATGGTCATGAGGTATCAGTAGTTGAGATGGATGGGCAATTTGACAGACTAGATGAACTGATATACATTGAGAGCCATCTAAGCAACCTCTCTAGCAAGTTCTATGGAGAGGTTACACAACAGATGTTAAAGCATTCTGATTTCCCAGGAAGCAACAATGGGACAGGTCTTTTCCAAACCATAATTGGTTTGAAGATAAGAGATTTATATGAGCAAATAGTAGCAAGCAGGGTTGAGGCTCCAGTAGGAGCAGCAAAAGCCTAG 1224 0.4126 MASCTVVYTTTTQSLNKNCSFSSKSHLGFHHQKHLVFYKRSSSKRGSPCVITCGAAAGDQTLVIGLAADSGCGKSTFMRRLTSVFGGRAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGIAVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDSRVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAFIDPQKQYADAVIEVLPTQLIADDNEGKVLRVRLIQKEGVKHFSPVYLFDEGSTISWVPCGRKLTCSYPGIKFSYGPETYYGHEVSVVEMDGQFDRLDELIYIESHLSNLSSKFYGEVTQQMLKHSDFPGSNNGTGLFQTIIGLKIRDLYEQIVASRVEAPVGAAKA 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1273 407 PRINTS Phosphoribulokinase family signature 68 85 IPR006082 GO:0005524|GO:0005975|GO:0008974
Sto11g1273 407 PRINTS Phosphoribulokinase family signature 177 195 IPR006082 GO:0005524|GO:0005975|GO:0008974
Sto11g1273 407 PRINTS Phosphoribulokinase family signature 212 229 IPR006082 GO:0005524|GO:0005975|GO:0008974
Sto11g1273 407 PRINTS Phosphoribulokinase family signature 230 253 IPR006082 GO:0005524|GO:0005975|GO:0008974
Sto11g1273 407 CDD PRK 63 351 - -
Sto11g1273 407 ProSitePatterns Phosphoribulokinase signature. 212 225 IPR006082 GO:0005524|GO:0005975|GO:0008974
Sto11g1273 407 PANTHER PHOSPHORIBULOKINASE 9 407 - -
Sto11g1273 407 Gene3D - 58 286 IPR027417 -
Sto11g1273 407 Pfam Phosphoribulokinase / Uridine kinase family 63 261 IPR006083 GO:0005524|GO:0016301
Sto11g1273 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 332 IPR027417 -
Sto11g1273 407 PANTHER URIDINE KINASE 9 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1273 Sto-Chr11 12479445 12482590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1273 115 289 PRT Gene Family AT3G27440 25.843 2.93e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1273 K00855 - cpap:110808289 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1273 11 12479445 12482590 Sto11g1273 11 12479445 12482590 ECH