Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1271 ATGAATATTGTGCAGGTGGTGATGGATAATGGCATCGTTAGTGTCTCATTGTCACGACCAGATGGAAACGTCCTTCAACTATCATACAATGGAATAAGTAATGTGCTTGAACCTCGAAATCATGATGATGATAGAGGGTACCTACCTATTTCTTcatcactttttcttttcttcttttattttgttttAATCCGAGGGACAAAGTTTTCGGTGATAATGGAGAACACAGATCAAGTTGAAGTTTCTTTCTCAACTACATGGAATTCTTTCGGTATCCCAATGAACATAGATAAAAGGTATATTTTGGTCAGAGGTAGTTCAGGATTATATTCATATGCCATATTTGAGCGTTTAGAAGGTTTCCCAGCCATGGAATTGAGTACCGTCAGACTCGTTTTCAAGCCACATCGAGACCTGTTTCACTTCATGGCCATATCAAACGACAGGCAGAGGTATATGCCGTCTGCTAGAGATAGAACCACGGGGCAACGCCTTGGTTATGACGAAGCTGTCCTCTTAACCCACCCAACCGACCCACACTTCCTACATGAGGTTGATGATAAATACCAATACTCAGTGGAGAACAAAGACAACTACGTGCATGGGTGGATCAGTTTTGGCACCAATTCATGTGTTGGGTTATGGATGATCACCCCTACCAATGAGTTTCGCAATGGTGGACCCATTAAGCAAAGCCTCACTTCCCACGTTGGCCCTGTCTCTCTCAACTCATTCGTTAGCTCCCACTATGCTGGAGAGGAGACAACCATGGCATTCCAAGAAGGAGAGACTTATAAAAAGGTATTCGGCCCTGTTTTTTACTACCTTAACTCTCTTCTAAACCACCATGATCCTCAAACTCTCTGGGCAGATGCTGTACAACAGACGTCTAAGGAAGTTAAAAGCTGGCCCTATGATTTCCCTCAATCAAAAGATTTCATTCCATCCAATCAACGCGCAAGAGTATCTGGACAATTACTAATCCAAGACCCATATATTCAAGGAGGGAGATTCATTCATGCTCGTGATGCTTATGTTGGTCTAGCTCTGCCTGGAGAAGCAGGATCATGGCAAAAAGAAAGCAagGGCTATCAATTTTGGACTCAAGCTGACAGAAATGGCTTCTTTACTATACCAAATGTTATACCAGGGGACTACGACCTCTATGCTTGGGTCCCTGGCTTTCTTGGTGATTATAAATATAACCTTTCTATTACCATCATaccaggtaGAGGTGTGATTGAAATGGGTAGACTTATTTATTGGCCTCCTAGAAATGGTCCTACTCTATGGGAGATTGGTATTCCTGATCGCTCAGCCGCAGAGTTCTATATACCAGACCCTTATCCAAATCTAATGAACCAATTATACAAAGGAAAACCACAACATAGGTTTAGGCAATACGGGTTGTGGCAACGCTACACTGAGTTATATCCAAGGAATGACCTCGTTTATAATGTTGGTGTGAATAATTACACCAAAGACTGGTTCTATGCTCAGGTTACCAGAAACCTTGGAAATGACAAATACACTCCGACCACATGGCAGATAACATTTGATCTCCCATATGTTGTGCCAGGAGCTTACACCCTACAAATTGCCTTGGCAGCAGCCACTTCTTCTCACTTGTCGgTTCGAGTGAATTATCCTTTAGCTCGTCGTCTCGGCCGCTTCGAGACCGGGTTAATAGGGCATGACAACGCCATAGCAAGACATGGCATCCATGGTTTGTATCGGAGGTACAGCATTGAAGTACCATGGAATCTACTTGTGAGAGGAAGGAACAGCATCTACCTGAGACAATCAAAAGGCCAAACACCTTTCCAAGGAATTATGTATGACTATGTCCGTTTTGAAGGGCCTCCAATTTAA 1872 0.422 MNIVQVVMDNGIVSVSLSRPDGNVLQLSYNGISNVLEPRNHDDDRGYLPISSSLFLFFFYFVLIRGTKFSVIMENTDQVEVSFSTTWNSFGIPMNIDKRYILVRGSSGLYSYAIFERLEGFPAMELSTVRLVFKPHRDLFHFMAISNDRQRYMPSARDRTTGQRLGYDEAVLLTHPTDPHFLHEVDDKYQYSVENKDNYVHGWISFGTNSCVGLWMITPTNEFRNGGPIKQSLTSHVGPVSLNSFVSSHYAGEETTMAFQEGETYKKVFGPVFYYLNSLLNHHDPQTLWADAVQQTSKEVKSWPYDFPQSKDFIPSNQRARVSGQLLIQDPYIQGGRFIHARDAYVGLALPGEAGSWQKESKGYQFWTQADRNGFFTIPNVIPGDYDLYAWVPGFLGDYKYNLSITIIPGRGVIEMGRLIYWPPRNGPTLWEIGIPDRSAAEFYIPDPYPNLMNQLYKGKPQHRFRQYGLWQRYTELYPRNDLVYNVGVNNYTKDWFYAQVTRNLGNDKYTPTTWQITFDLPYVVPGAYTLQIALAAATSSHLSVRVNYPLARRLGRFETGLIGHDNAIARHGIHGLYRRYSIEVPWNLLVRGRNSIYLRQSKGQTPFQGIMYDYVRFEGPPI 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1271 623 Pfam Rhamnogalacturonate lyase family 5 185 IPR010325 -
Sto11g1271 623 CDD RGL4_N 5 278 - -
Sto11g1271 623 Pfam Polysaccharide lyase family 4, domain III 429 617 IPR029411 -
Sto11g1271 623 SUPERFAMILY Starch-binding domain-like 315 410 IPR013784 GO:0030246
Sto11g1271 623 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 5 622 - -
Sto11g1271 623 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 5 622 - -
Sto11g1271 623 Pfam Polysaccharide lyase family 4, domain II 342 411 IPR029413 -
Sto11g1271 623 Gene3D - 4 276 IPR014718 GO:0030246
Sto11g1271 623 SUPERFAMILY Galactose-binding domain-like 426 619 IPR008979 -
Sto11g1271 623 Gene3D - 315 412 - -
Sto11g1271 623 CDD RGL4_C 431 619 - -
Sto11g1271 623 Gene3D - 427 619 - -
Sto11g1271 623 CDD RGL4_M 318 419 IPR029413 -
Sto11g1271 623 SUPERFAMILY Galactose mutarotase-like 13 278 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1271 Sto-Chr11 12463658 12468581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1271 5 621 Polysaccharide Lyase AT4G38030 53.418 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1271 K18195 - gmx:100792575 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4230 6 45397019 45407529 Sto11g1271 11 12463658 12468581 CCT