Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1250 ATGGGGGTCGGTGAGAATGAAAGCACATCATCAGTTCGAGAGTTTTATGCAAATGGAATTCGGATGAGCACAGCTGAAGTTGAAGCAAAGCTTGACCAAGGAGATATTAAAGAGGCAGAATCTGCATTGCAAGAAGGCCTATCTATCACTTCTGAGGAAGCAAGAACTCTTCTTGGGAAGTTGGAATATCAAAGAGGCAAGTTAGCAAGTGCTCTTCGTGTGCTTGATGGGATTGATATCCAAACTTCCATACAGCAATTGCAATCTCTAGTTTCTGAGAAATCATCAGCCAAGAAAGGACGCCCTCGTGCTGAATCGCCTACCTCCGTCTCTCGCCATGCTGCTAGCTTGATGCTTGAATCCATCTACTTCAAAGCAAAGACTCTACGAAAGCAGGGCAAATTAACTGAAGCTACAACTGAATGCAAAAGTGTACTTGAGGGTATTGAGAAGACATTTAGTCAGGGAGTATCTGATATTCAATTGGACAGTAAATTGCAAGAAGTAGTGAGTGACATTGTAGGGCTCCTTCCAGAGCTTACAAAACAAGGCAGTAGCTATCAGGAGGCATTGTCTGCTTATAGGCGTGCCCTTCAACTTTTAAGTCAATGGAACTTTGATACTGATGGCTGTGCAAGAATTCAGAAAGGACTTGCTGTGTTTTTGCTGTACAGTGGGTCAGAGTTTACCCCACCAAGTTCATCAGGGCAGGCTGAAGGGTCTTATGCACCGAAAAATAACCTAGAAGAGGCAATTCTGCTTCTAATGCTTGCAGTGAAGAAACTTTGTGTTGATAAGACCAAATGGGATCCTTCTGTGATGGAACACCTGAGTTTTGCCCTTTCCATATGTGGTCAAACTTGTGTTTTAGCCAAGCAACTGGAAGAGTTAATGCCGGGATTATATCATCGAATTGACCGTTGGAATTACTTAGCTTTGTGTCTGAGTGGAGCCGGACAAAACAAAGGTGCTTTGGATCTTCTTAGGAAATCTTTGCACAAACATGAAAGACCAGATGACCTTACATCGTTGTTATTGGCTGCCAGGATATGCAGTGAGGATCCTTATTTTGCTGGTGAGGGAGTGGGGTATGCAGAGAGGGCAGTCAAGAAATCCAAAGGCATAGATGAGCATTTAAGAGGTGTGAGTCTTAGGATGTTGGGACTTTGTCTTGGAAAGCAAGCTAAGGTTGCTCCCTCCGACTTTCAGAGGAGTAATCTTCAGTCCAAAGCTCTGAAATCATTGGAGGGGGCACTGGGATTAGAGCCAAACAATGCGGATCTAATTTTCGAGTTGGGTGTTCAATATGCGGAGCACCGGAATTTGACGACTTCTTTGCGCTATGCAAAGCAGTTCTTTGATGAAACAGGTGGCTCTATATTAAAAGGTTGGAGATTGCTTGCGCTAGTTTTGTCTGCTCAGAAACGATATGTGGAGGCTGAAGTGGTGATAAATGCTGCTTTAGATGAGACTGCAAAATGGGAGCAGGGGCCATTGCTTAGACTGAAAGCAAAGCTGAAGATTTCACAGTCAAAACCAATGGATGCTATTGAAACTTATAGGTACCTCCTTGCATTGATTCAAGCCCAGAGGAATTCCTTTGGGCCTTTGAAAATTAATACACAGgTTAAGGATGATGTAAATGAATTTGATGTTTGGCATGGTCTGGCAAATTTATATGCAAGCCTTTCTCATTGGAAAGATGCTGAAGTTTGTTTGCAAAAGGCCGGAGAGTTGAAGGAGTACTCAGCAGAAATAGTGCACACTGAAGGTGTTATGTATGACGGACGTGGGGAACAGCCGGAAGCTATTGCTGCTACATTGAACGCTCTCCTACTTGAACCATACTATATTCCAAGCAAGATCTTGATGGGCACTTTGATGCTGAAAATGGATTCCAAGTCTAAGACTTTGCCTGTTGCAAGAAGCTTACTTTCTGATGCGCTTCGATTAGAACCCACTAATCGCAAGGCTTGGTATTACTTGGGAAAAGTTCACAAGGATGATGGCCGAATAGGTGATGCTGCTGACTGCTTCCAGGCAGCTTCCATGCTTGAAGAATCTGATCCTATTGAAGGTTTCAGCACTATTCTTTGA 2097 0.4344 MGVGENESTSSVREFYANGIRMSTAEVEAKLDQGDIKEAESALQEGLSITSEEARTLLGKLEYQRGKLASALRVLDGIDIQTSIQQLQSLVSEKSSAKKGRPRAESPTSVSRHAASLMLESIYFKAKTLRKQGKLTEATTECKSVLEGIEKTFSQGVSDIQLDSKLQEVVSDIVGLLPELTKQGSSYQEALSAYRRALQLLSQWNFDTDGCARIQKGLAVFLLYSGSEFTPPSSSGQAEGSYAPKNNLEEAILLLMLAVKKLCVDKTKWDPSVMEHLSFALSICGQTCVLAKQLEELMPGLYHRIDRWNYLALCLSGAGQNKGALDLLRKSLHKHERPDDLTSLLLAARICSEDPYFAGEGVGYAERAVKKSKGIDEHLRGVSLRMLGLCLGKQAKVAPSDFQRSNLQSKALKSLEGALGLEPNNADLIFELGVQYAEHRNLTTSLRYAKQFFDETGGSILKGWRLLALVLSAQKRYVEAEVVINAALDETAKWEQGPLLRLKAKLKISQSKPMDAIETYRYLLALIQAQRNSFGPLKINTQVKDDVNEFDVWHGLANLYASLSHWKDAEVCLQKAGELKEYSAEIVHTEGVMYDGRGEQPEAIAATLNALLLEPYYIPSKILMGTLMLKMDSKSKTLPVARSLLSDALRLEPTNRKAWYYLGKVHKDDGRIGDAADCFQAASMLEESDPIEGFSTIL 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1250 698 ProSiteProfiles TPR repeat profile. 656 689 IPR019734 GO:0005515
Sto11g1250 698 SUPERFAMILY TPR-like 186 488 IPR011990 GO:0005515
Sto11g1250 698 SMART tpr_5 461 494 IPR019734 GO:0005515
Sto11g1250 698 SMART tpr_5 550 583 IPR019734 GO:0005515
Sto11g1250 698 SMART tpr_5 584 617 IPR019734 GO:0005515
Sto11g1250 698 SMART tpr_5 656 689 IPR019734 GO:0005515
Sto11g1250 698 SMART tpr_5 305 338 IPR019734 GO:0005515
Sto11g1250 698 Pfam Tetratricopeptide repeat 26 75 - -
Sto11g1250 698 SUPERFAMILY TPR-like 500 686 IPR011990 GO:0005515
Sto11g1250 698 PANTHER CALMODULIN-BINDING PROTEIN 8 697 - -
Sto11g1250 698 Gene3D Tetratricopeptide repeat domain 538 619 IPR011990 GO:0005515
Sto11g1250 698 Gene3D Tetratricopeptide repeat domain 20 535 IPR011990 GO:0005515
Sto11g1250 698 PANTHER PROTEIN NPG1 8 697 IPR043376 -
Sto11g1250 698 SUPERFAMILY TPR-like 31 329 IPR011990 GO:0005515
Sto11g1250 698 Gene3D Tetratricopeptide repeat domain 623 692 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1250 Sto-Chr11 12282178 12285850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1250 4 698 Calmodulin-binding Proteins AT2G43040 67.192 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1250 K21843 - gmx:100811897 968.378