Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1247 ATGAAGCATAATAATGTTATCCCCAGTTCGCACTTCAGGAAGCATTGGCAAAATTATGTGAAAACTTGGTTCAATCAACCAGCAAGAAAGACTAGGAGACGCTTAGCTCGTCAAAAGAAAGCAGTTAAGATTTTCCCTAGGCCTACTGCTGGACCTCTTAGACCCATTGTTCATGGTCAAACTTTGAAATACAACATGAAAGTCAGAGCTGGAAGAGGATTTTCTCTTGAAGAACTGAAGGCTGCCGGTATTCCCAAAAAGCTTGCTCCAACCATCGGCGTATCTGTTGATCACCGTCGCAGGAACCGTTCTTTGGAAAGTCTCCAAGCTAATGTCCAGAGGCTGAAAACTTACAAGGCCAAGTTGGTTGTGTTCCCCAGACGTGCACGCAAGGTCAAGGCTGGTGATTCTTCACCCGAGGAACTTGCAAATGCTACACAAGTTCAGGGTCCATTCTTGCCCATTGTGAGGGAGAAGCCATCTGTGGAGCTTGTTAAGGTTACTGATGAGATGAAGGCATTCAAGGCTTATAACAAGCTTCGCCTTGAACGCACGAACGAACGCCATGTTGGTGTCAGGCTGAAGAGGGCTGCTGAAGcagaaaaggaagaaaagaagtga 621 0.4477 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGVSVDHRRRNRSLESLQANVQRLKTYKAKLVVFPRRARKVKAGDSSPEELANATQVQGPFLPIVREKPSVELVKVTDEMKAFKAYNKLRLERTNERHVGVRLKRAAEAEKEEKK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1247 206 Hamap 50S ribosomal protein L13e [rpl13e]. 44 127 IPR001380 GO:0003735|GO:0005840|GO:0006412
Sto11g1247 206 PANTHER 60S RIBOSOMAL PROTEIN L13 2 206 IPR001380 GO:0003735|GO:0005840|GO:0006412
Sto11g1247 206 ProSitePatterns Ribosomal protein L13e signature. 69 83 IPR018256 GO:0003735|GO:0005840|GO:0006412
Sto11g1247 206 PANTHER 60S RIBOSOMAL PROTEIN L13 2 206 - -
Sto11g1247 206 Pfam Ribosomal protein L13e 6 184 IPR001380 GO:0003735|GO:0005840|GO:0006412
Sto11g1247 206 Gene3D - 166 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1247 Sto-Chr11 12267391 12268880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1247 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 84.817 8.48e-126 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1247 K02873 - gmx:100805957 368.622