Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1242 ATGGGGTACGATTCAGATAGCCCCTCACAAGATGGGAGGGATGAAGATGATGATGAGGAATATGAGGAAACTGGCAAGGGCAATCGGTTGCTGGGTTTCATGTTTGGAAATGTTGATAATTCTGGCGATCTTGATGTCGATTACCTTGACGAGGATGCTAAGGAGCATCTTTCTGCACTTGCTGACAAGCTGGGTCCATCGCTGACTGATATAGATTTGTCAGGAAAATCACCACAAACACCACCTGAAGCTGTTGAACAAGACTATGATGAGAAGGCTGAAGATGCAGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGATGGAAGCTGCAAATGAAGAGGACTATTTATTgccaaaaaaagaatttttttctgTTGAAGTTTCTCTTGAAGCTCTAAAATCCAGATCTTCTGTCTttgatgatgaaaattatgacGAAGAATCTGAAAAGGAGGAAGACTTTGTGAATAGCAATGCTGAAGTTGACAACATCTCTTTAACTGGGGAGCAGGTAGAGAGTCTTGTTGATGGATCTAAACCAGAGAGAGCTGAAGAACATGATTCACATGCCTCACAGCAGTCTGAAGAATCGGACACTAATGTACAAAATCTACAGGAGGAAGGGCCTGAAGTTTTGAAAGGTTCTACTCCATTGCCTATTTTATGTGTGGAAGATGGGATGGTCATTTTAAGGTTCTCTGATATTTTTGGTATTCATGAACCTTTGAGAAAGGGAGGGAGGAGAGAGCATCGACCTTCTATTCCTAGAGATAGGTACAAGTCTTTAAATTTATCTGATATTGTAGAAGAGGATGAAGAGGCATTCCTCAGGGGCTCTTCTCAGAATGTCTTACTAAACAAGCAGGCATATGCAGTTCAAAATGGTGTATCAGAAAGTAATGATGCTGACTTGGATTTTTCCAAATTTGGATTTCTTCATGGGGATGTCTCAGTGGCTTTGGAAGGTGATCAACAACAAAAGGACTCTTGTCTCAGTGCTGAACCAATGAAAGAGAATTTTACAGGTCTTTCCTTGGAAGATAGTTCTCTTTTATGTGCCGACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGAAATTCCCCTGCGGCAAGTGACCATAATATCGGGAGCTTTGAAATTTCTGGACCTGATTTGGGACCTTTAGGTTGTAGTGATGCAGAAATTGAAAGCGGGATACAAAATGTCCAGTTGGAGCTGCAGAAGGACTTGGAAGAGAAAGATCATAGTGTTTTCTTGTGCAGCTCTCCTGTTTCATTGGAGCCCTTTGGCTCGAGGAATTCTTTGGGAGATAAAACCAACTCATTGTCAAAGAATCTATTTCATCCTCAACTCTTGAGGTTAGAATCCAGACCTGAATTGGATATCTCTAGTCCTGCAGATGGCAGGAGGGAGAATATATCCGAGGAACAAAATCAAAGTGGTTTAGTTAAGCATTTTACCAAAGTTACATTACAAAACCAAGACATGATGGAAGGGTCTTGGATAGACAAGATTATATGGGAGGAAGTCAATAGACCTATAGTGAAACCAAAGCTAATCTTTGATCTCCAGGATGATCAAATGCACTTTGAAGTTTTGGATAGTAAGGATGGTAGACACCTTCGCCTACATGCAGGAGCAATGATCTTATCTCGATCCTTAAAATCGAGCCATGGAGACTCTTCTGAGCTACCTGGACATGGAGGGCAATATGGATGGCGATCCATTGCTAATGACAAACATTATTCTAACAGGAAAACTTCTCAGCAACTgaaatcaaattcaaaaaaacGCTCAGCTCATGGCGTCAAAGTTTTTCACTCTCAACCTGCACTGAAGCTTCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGTCCAAGAGCGTTATGGTATCCTCATGACAATGAGGTGGCTGTCAAAGAACAAGGAAAACTGCCAACACAAGGACCCATGAAAATTATTATGAAGAGCTTGGGTGGAAAGGGGAGTAAATTGCATGTTGACGCCGAAGAAACACTCTCTTCTGTTAAAGCAAAAGCATCTAAAAAGCTAGATTTCAAACCATTGGAAACagtcaaaatattttatctagGGAAGGAGCTTGAAGAGCAGAAATCACTTTCTGCGCAAAATGTTCGACCAAACTCCTTGTTACATCTTGTTCGTACAAGGATAAATTTGTGGCCAAGGGCACAAAGGGTTCCTGGTGAGAACAAGTCTTTACGTCCTCCTGGGGCGTTCAAGAAAAAGTCTGATCTATCCGTGAAAGACGGACATGTTTTTCTAATGGAGTATTGTGAGGAAAGACCTTTACTTGTAAGCAATGCTGGAATGGGTGCTAGACTTTGTACATACTATCAAAAATGTTCTCCAGATGATCAAGCTGGCTCTTTATTACGCAACACAAATAGTAGCTTGGGACATGTTATTTCCCTGGATCCTGCTGATAAATCTCCATTTCTTGGAGATTTAAAACCTGGTTGCAGTCAGTCATCACTTGAGACAAACATGTATAGAGCGCCTATATTCCCTCATAAAGTGCCATTAACCGACTACTTACTAGTTCGTTCATCAAAGGGAAAGCTATCATTAAGACGCATTGATAAAATTAATGTTGTTGGACAGCAGGAGCCTCTTATGGAAGTATTATCGCCTGCAAGTAAGAATCTTCAGACATATATGATGAACAGGCTACTGGTGCACATGTGCCGTGAATTTCAAGCTGCAGAAAAGCGCCACTTGCCTCCGTACATTCGTGTTGATGAGCTTCTGTCGCAATTTCCTTACCTATCAGAAGCCTCTTTTCGCAAGAAAATTAAGGAATATGCTCATTTACAGAAGGGAACAAATGGACAGTCAATTTTGGCTAAAAAGCGAAATTTCCGCATGTGGTCGGAGGatgaattgagaaaaatggtgACACCAGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCTGGTCTGTACCGTCtaaaacatttaggaataactgAAACACATCCTACTAATATATCTTCTGCTATGAGTCGGCTTCCTGATGAGGCAATAGCATTGGCTGCTGCATCACACATTGAGAGGGAGCTGCAGATTACTCCATGGAACCTGAGTAGCAACTTTGTTGCCTGCACGAGTCAGGGAAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGGGATCCATCTGGCCGTGGCTTGGGTTTTAGCTATGCTCGGGCTCCTCCAAAGGCACCGGTGTCAAGTGCAGTGGTGAAGAAGAAAGCAGCTGCTTCTAGGGCAGGTTCCACTGTTACTGGAACAGATGCTGATCTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCAGAGGAAGTCATAGCGAAACAAACCAGGTGGCATCGCATTGCTATGATACGCAAACTTTCAAGTGAACAAGCTGCATCCGGGGTTAAGGTTGACCCAACAACTATCAGCAAATATGCTCGTGGACAGCGAATGTCGTTTCTTCAACTACAGCAGCAAACCCGGGAGAAGTGCCAAGAGATTTGGGATCGACAAGTTCAAAGTCTTTCAGCTGTAACTGGTGATGAAAATGATAGTGATTCTGAAGGAAATAGTGATCTAGATTCTTTTGCTGGTGATTTAGAAAATTTACTTGATGCTGAGGAGTGTGAAGAGGGAGAAGAGGGCACCAATGATTTCAAACGTGACAAGGGGGATGGTGTTAAGGGACTTAAAATGAGAAGACGTCCAACCTTAGCCCAGGCAGAAGAGGAAATAGAAGATGAAGCAGCTGAGGCTGCTGAATTATGCAGATTACTCATGGATGatgatgaagatgacaggaagaaaaagaagaaggctAGAAATGTTGTTGAGGAAGCAGGATTGGTGCCAAAGCTACAACCAAGATTTATCTTTGACCACACAGATCAGGTTAAGCAAATAGCTAATGCTGTGCAACTGGATGGAACcaatattttgaaagaaaatacaGTTACAAATCTAAGGGAGGAAGAAGGTATTTCTGCTAAAAAAAGCAAATCAGTGAAGGTCAATAAAGCAAAGAAGAATGACCTTTCACCTATTAGTctgccaaataaaaaaataaaactaaatattGGGGATGGACCAAAGGTATTCAAGGAGAAAAAACCATCAAGGGAAAGCTTTGTCTGTGGAGCATGTGGTCAGCTTGGGCATATGAGAACAAACAAGAACTGTCCAAAATATGGTGAAGATCTTGAAGCACAACTTGAATCTGTAGACATTGAAAAAACGGGTGGAAAATCTAGCTCTTTGGATCCCTCTGGTCAGTCCCAGCAGAAAGCCCTGTCCAAGAAGCTAATATCAAAAAGCTCAACCAAAATTGCTCCAGTTGAAGCTCCTGAAGGAGAAAAATCTAGTTTGAAGACAAAAGTTCTTCCTGTTAAGTTCAAATGCAGCTCCACTGAAAAGCTTCCTGAAAAACAGGCAATTGAAGCCCCCCAGAGTTCAGATAAGCTAGTCACTTCTGACTCAGAAACTGCCAAGTCTGTCAAGCTCAATAGAATTTTCATTCCCAACAAAATGAAGCCAGATGATATGCATGCCGAATCTCGTAAGCATGCTATTGCTATTCGGCCTCCCGCAGATACAGGTAGAGGTCAAGTTGATTCACTTAAGCGGTCCATTATAATTCGACCACCTACAGAAACAGAGAGGGAGCAACCTCACAAGAAAGTTATTTTTAAACGCACGAAGGAGGTTATGGATGTGGACCCAATCAGTCCTGGTGAAAACTCAGGATTTGAACACAGAAAAACTAAGAGAATTGTTGAATTGTCAAATTTTGAGAAGCACAGAAAGCAGGAGACTACGTATTCAGCTGAAGCACTGGTAAAACGGAAAGCTAAAGAGGAAAGAAGATGGTGGGATGAGCAAGAGAAGAGGAGAAATGATGCAAGACTCAGAGAAGACAGGGCAAGGAGGCTTCTCGAAGATGAAATGAGGATGCGAAAAGAGCAAGAAACTGTAGCATACttaaaagaatatgaagaaGATATTAGGAGAGAGacggaggaggaagaagaacggaagaaagaaaagaagaaaaagaagaaaaaggctGAATTTAGAGATGAGTATTTAGATGACCGTAGAACAAGGAGATTTGATAACAGTGTGGTAGAAAAAGATCGGAGTGGAAAAAGGAGATCTGTTGTTGAGTTTGGAAGGTATGCTGCAGAGTATACACAACCAACGAAACGGCGAAGAGGTGGAGGGGGAGAGGTTGGTTTGGCAAATATTTTGGAGCGCGTTGTGGAAAACCTGAAAGACAGGTATGACCTGTCCTTTCTTTTCTTGAAACCGGTGTCCAAGAAAGAGGCTCCTGACTACCTGGACATTATAGAAAGGCCTATGGATCTTTCAAGAATTAGGGAGAAGGTGAGGAATATGGAGTACAAGAGCCGTGAAGACTTTAGACATGATGTGTGGCAGATTACTTATAATGCCCATAAATATAACGATGGGAGAAACCCAGGAATCCCTCCCCTTGCAGATCAGCTTTTGGAGCTTTGTGATTATTTGTTGAATGAGAATGACGATAGCCTAACTGAAGCTGAAGCTGGTATTGAATCTAGGGATTTTTAG 5679 0.4022 MGYDSDSPSQDGRDEDDDEEYEETGKGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPEAVEQDYDEKAEDAVDYEDIDEEYDGPEMEAANEEDYLLPKKEFFSVEVSLEALKSRSSVFDDENYDEESEKEEDFVNSNAEVDNISLTGEQVESLVDGSKPERAEEHDSHASQQSEESDTNVQNLQEEGPEVLKGSTPLPILCVEDGMVILRFSDIFGIHEPLRKGGRREHRPSIPRDRYKSLNLSDIVEEDEEAFLRGSSQNVLLNKQAYAVQNGVSESNDADLDFSKFGFLHGDVSVALEGDQQQKDSCLSAEPMKENFTGLSLEDSSLLCADFYPLDQQDWEDEIIWGNSPAASDHNIGSFEISGPDLGPLGCSDAEIESGIQNVQLELQKDLEEKDHSVFLCSSPVSLEPFGSRNSLGDKTNSLSKNLFHPQLLRLESRPELDISSPADGRRENISEEQNQSGLVKHFTKVTLQNQDMMEGSWIDKIIWEEVNRPIVKPKLIFDLQDDQMHFEVLDSKDGRHLRLHAGAMILSRSLKSSHGDSSELPGHGGQYGWRSIANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHDNEVAVKEQGKLPTQGPMKIIMKSLGGKGSKLHVDAEETLSSVKAKASKKLDFKPLETVKIFYLGKELEEQKSLSAQNVRPNSLLHLVRTRINLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLVSNAGMGARLCTYYQKCSPDDQAGSLLRNTNSSLGHVISLDPADKSPFLGDLKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPASKNLQTYMMNRLLVHMCREFQAAEKRHLPPYIRVDELLSQFPYLSEASFRKKIKEYAHLQKGTNGQSILAKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKAAASRAGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVTGDENDSDSEGNSDLDSFAGDLENLLDAEECEEGEEGTNDFKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDDEDDRKKKKKARNVVEEAGLVPKLQPRFIFDHTDQVKQIANAVQLDGTNILKENTVTNLREEEGISAKKSKSVKVNKAKKNDLSPISLPNKKIKLNIGDGPKVFKEKKPSRESFVCGACGQLGHMRTNKNCPKYGEDLEAQLESVDIEKTGGKSSSLDPSGQSQQKALSKKLISKSSTKIAPVEAPEGEKSSLKTKVLPVKFKCSSTEKLPEKQAIEAPQSSDKLVTSDSETAKSVKLNRIFIPNKMKPDDMHAESRKHAIAIRPPADTGRGQVDSLKRSIIIRPPTETEREQPHKKVIFKRTKEVMDVDPISPGENSGFEHRKTKRIVELSNFEKHRKQETTYSAEALVKRKAKEERRWWDEQEKRRNDARLREDRARRLLEDEMRMRKEQETVAYLKEYEEDIRRETEEEEERKKEKKKKKKKAEFRDEYLDDRRTRRFDNSVVEKDRSGKRRSVVEFGRYAAEYTQPTKRRRGGGGEVGLANILERVVENLKDRYDLSFLFLKPVSKKEAPDYLDIIERPMDLSRIREKVRNMEYKSREDFRHDVWQITYNAHKYNDGRNPGIPPLADQLLELCDYLLNENDDSLTEAEAGIESRDF 1892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1242 1892 Pfam Bromodomain 1779 1854 IPR001487 GO:0005515
Sto11g1242 1892 MobiDBLite consensus disorder prediction 1441 1468 - -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 179 197 - -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 1576 1590 - -
Sto11g1242 1892 SMART ubq_7 666 738 IPR000626 GO:0005515
Sto11g1242 1892 ProSitePatterns Bromodomain signature. 1793 1850 IPR018359 -
Sto11g1242 1892 Gene3D - 21 68 IPR036741 -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 469 483 - -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 1244 1272 - -
Sto11g1242 1892 Pfam Protein of unknown function (DUF3591) 585 1152 IPR022591 -
Sto11g1242 1892 SUPERFAMILY Ubiquitin-like 636 736 IPR029071 -
Sto11g1242 1892 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 1539 1590 - -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 139 220 - -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 1 32 - -
Sto11g1242 1892 Gene3D - 1755 1891 IPR036427 GO:0005515
Sto11g1242 1892 MobiDBLite consensus disorder prediction 162 176 - -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 1206 1226 - -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 1539 1556 - -
Sto11g1242 1892 Coils Coil 1268 1288 - -
Sto11g1242 1892 PRINTS Bromodomain signature 1791 1804 IPR001487 GO:0005515
Sto11g1242 1892 PRINTS Bromodomain signature 1805 1821 IPR001487 GO:0005515
Sto11g1242 1892 PRINTS Bromodomain signature 1821 1839 IPR001487 GO:0005515
Sto11g1242 1892 PRINTS Bromodomain signature 1839 1858 IPR001487 GO:0005515
Sto11g1242 1892 MobiDBLite consensus disorder prediction 1239 1273 - -
Sto11g1242 1892 Pfam TATA box-binding protein binding 17 61 IPR009067 -
Sto11g1242 1892 SMART bromo_6 1768 1878 IPR001487 GO:0005515
Sto11g1242 1892 MobiDBLite consensus disorder prediction 1501 1523 - -
Sto11g1242 1892 Gene3D - 648 739 - -
Sto11g1242 1892 PANTHER BNAA01G26290D PROTEIN 14 1296 - -
Sto11g1242 1892 PANTHER BNAA01G26290D PROTEIN 1358 1887 - -
Sto11g1242 1892 Coils Coil 1690 1721 - -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 1441 1484 - -
Sto11g1242 1892 SUPERFAMILY Bromodomain 1760 1882 IPR036427 GO:0005515
Sto11g1242 1892 CDD Bromodomain 1778 1873 - -
Sto11g1242 1892 ProSiteProfiles Bromodomain profile. 1788 1858 IPR001487 GO:0005515
Sto11g1242 1892 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1358 1887 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Sto11g1242 1892 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 14 1296 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Sto11g1242 1892 Pfam Ubiquitin family 670 738 IPR000626 GO:0005515
Sto11g1242 1892 CDD Ubl_TAFs_like 666 737 - -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 592 614 - -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 65 93 - -
Sto11g1242 1892 MobiDBLite consensus disorder prediction 467 488 - -
Sto11g1242 1892 ProSiteProfiles Ubiquitin domain profile. 666 736 IPR000626 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1242 666 736 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 4.27e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1242 K03125 - gmx:100780733 2783.44