Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1235 atgaagaaggaaggtgaGAGAAGGAAAGGGGTTATCTTGCTATGGTGGTTTGGAATGACTGTGCAACTCTGCTTCTTGCTGGGTGGTTCTTCTGAAATTGAGAAGACCTCTGTTAGAAGAGAATTGAGGGAAATGAACAGTGGAAAAAGGAGAGTTTCTATTTCAGGAGTTAAGCTGatgaatgaagaagatgatAGGCGAGTGGTGATTGATAATGGCATCGTCCAAGTCACTCTGTCTAGACCAGAGGGGTATGTTGTTGGAATATCATATAATGGAATCGACAATGTGCTAGAACCCCGGAACGAAGAACAAGACAGAGGGTATTTTGATGTGGTTTGGAATAAAGCAGGAAAAAATAGTACTTTTCAGAGAATCCATGGGACAGAATTTTCAATTGTGACATTGGACGAGAATGAAGTGGAGATTTCATTTGTAAGAACATGGACAAGTTCCATGGAAGGCACAGATGTGCCCATAAACATAGACCAGAGGTATATATTGCGAAGAGGGGATTCAGGATTTTACTCGTACACGATATTCGAGCGGCCAGAAGGATTTCCAGCAGTGGAGGTGGATCAAATTAGGAATGTTTTTAAACTCCGGGAAGAaagGTTCAAGTATATGGCTATATCAGATTATAGGCAAAGATGGATGCCAACGAAGGAAGATAGAGAAGGTGGACAAATTCTAGCTTATCCTGAAGCAGTTCTCTTAACCAACCCAACGAACGAAGACTTCAGAGGAGAGGTGGACGACAAATACCAATACTCATGTGAGAACAAAGACAACAGAGTACATGGTTGGATTAGCTTCGATTCAGAAGCCCCCGTGGGGTTTTGGATAATAACACCCAGCAATGAGTTCCGTAATGCTGGGCCCATCAAGCAAGACCTCACCTCACACGTTGGTCCTATCGCTCTCTCGATGTTTGTGAGCACCCACTATGCGGGGAAGGAGATCACCATGGCATTTCAAGAAGGGGAGACCTATAAGAAGGTTTTTGGTCCTATTTTTGTTTATCTTAACTCTGTTTCTACCGACCAGGATCCACTAACCCTCTGGCCAGATGCTGTCAACCagATGTCACAGGAAGTCAACAGCTGGCCTTATGATTTCCCTCAATCCCAAGATTACATTCCTCCCACTCAACGTGGAACTGTGTTTGGAAGATTACTAGTTCAAGACCTTTACATCAGGGGAGGCAGATTTCTACATGCTAAATATGCTTATGTTGGTCTTGCTCTCCCTGGACCTCTTGGATCATGGCAAAAAGAAAGCAAGGGTTATCAATTTTGGACCCAAGCTGACAAGAAGGGCTATTTCCTGATACAAAATGTTGTGCCAGGGGACTACAATTTATTTGCCTGGCTTCCCGGCTTTATTGgcgattatatatataatgcaacaATCACCATCACACCTGGGTGTTTCATCAAATTGGATTCAATGGTCTTTAACCCTCCAAGAAATGGTCCTACCCTTTGGGAAATTGGCGTGCCCGATCGTTCAGCCGCAGAATTCTACATCCCAGACCCTTACCCTACACTCATGAACAAATTATACAATGAACAACCTAAAGACAAGTTTAGGCAATACGGATTGTGGGAACGTTATGCTGATTTATATCCAAATAACGATCTACTTTACACTGTTGGTGTTGATAAGTATGATCAAGATTGGTTCTATGCTCAGGTTACAAGGAGCACAGGAAATAGGACATATCAACCAACTACATGGCAGATTGTATTTGAACATCAAAACGACATATTCATAggaaactacacactacaattgGCCTTAGCATCAGCCAATGATGCTGAATTACAGGTTTGGATCAATGAAATAGGTGATTTTCCTCCCCAGCTTGACACTGGAAAAATAGGCAGAGATAGTGCCATTGCAAGGCATGGAATTCATGGATTATATCGGTTGTTTAGCATTGATGTTCCAAGCCATCTTTTGGTGAAAGGGAAGAATACTATCTATTTAAAGCAGTCATGGGCTATAAATCCTTTTCAAGGAGTTATGTATGATTATATACGTTTAGAAAGACCTCCAATTATAAGAACTTGA 2076 0.4051 MKKEGERRKGVILLWWFGMTVQLCFLLGGSSEIEKTSVRRELREMNSGKRRVSISGVKLMNEEDDRRVVIDNGIVQVTLSRPEGYVVGISYNGIDNVLEPRNEEQDRGYFDVVWNKAGKNSTFQRIHGTEFSIVTLDENEVEISFVRTWTSSMEGTDVPINIDQRYILRRGDSGFYSYTIFERPEGFPAVEVDQIRNVFKLREERFKYMAISDYRQRWMPTKEDREGGQILAYPEAVLLTNPTNEDFRGEVDDKYQYSCENKDNRVHGWISFDSEAPVGFWIITPSNEFRNAGPIKQDLTSHVGPIALSMFVSTHYAGKEITMAFQEGETYKKVFGPIFVYLNSVSTDQDPLTLWPDAVNQMSQEVNSWPYDFPQSQDYIPPTQRGTVFGRLLVQDLYIRGGRFLHAKYAYVGLALPGPLGSWQKESKGYQFWTQADKKGYFLIQNVVPGDYNLFAWLPGFIGDYIYNATITITPGCFIKLDSMVFNPPRNGPTLWEIGVPDRSAAEFYIPDPYPTLMNKLYNEQPKDKFRQYGLWERYADLYPNNDLLYTVGVDKYDQDWFYAQVTRSTGNRTYQPTTWQIVFEHQNDIFIGNYTLQLALASANDAELQVWINEIGDFPPQLDTGKIGRDSAIARHGIHGLYRLFSIDVPSHLLVKGKNTIYLKQSWAINPFQGVMYDYIRLERPPIIRT 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1235 691 Pfam Rhamnogalacturonate lyase family 54 251 IPR010325 -
Sto11g1235 691 CDD RGL4_M 384 481 IPR029413 -
Sto11g1235 691 SUPERFAMILY Galactose-binding domain-like 491 684 IPR008979 -
Sto11g1235 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 62 687 - -
Sto11g1235 691 Pfam Polysaccharide lyase family 4, domain III 494 683 IPR029411 -
Sto11g1235 691 SUPERFAMILY Starch-binding domain-like 380 482 IPR013784 GO:0030246
Sto11g1235 691 Gene3D - 380 478 - -
Sto11g1235 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 62 687 - -
Sto11g1235 691 CDD RGL4_C 496 684 - -
Sto11g1235 691 Pfam Polysaccharide lyase family 4, domain II 408 479 IPR029413 -
Sto11g1235 691 CDD RGL4_N 61 350 - -
Sto11g1235 691 Gene3D - 492 684 - -
Sto11g1235 691 SUPERFAMILY Galactose mutarotase-like 63 346 IPR011013 GO:0003824|GO:0005975|GO:0030246
Sto11g1235 691 Gene3D - 60 359 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1235 Sto-Chr11 12180452 12184800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1235 54 686 Polysaccharide Lyase AT1G09890 56.515 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1235 K18195 - gmx:100776664 1045.03