Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1221 ATGAATGAATGGGTTTGGGATGGTAGGACACCTGGGTTTCTTCCTCATCAGTCTTTTATGATTGACACTGATCTGAtgATGTGCCGCCATTTTGCCTATGTGGATTGCCTCCCTTGTCTTTACCCCAATCTCTCCTCTGTTCACTCCATCACACGCTACACATATCTAACACCTAAATACTGTTCCCTGAAATCTTCTGATGACTTGGGCCTGccttttgcttttgcttttgctttcATTCGCCACCCAAAGCTTGAGTTTGACCACACCACCCAACCCATTTTCAAATTTAAAATTTTGACCATTCCTTGCCCTGATATTGATATTCTTGGCTTTTCCTTTGCATGGAACGTGGCTCGGTGCATTTCTGGCTGTGGATATGACAAAGAAGAAAAGGCCGCAAGAGCCTATGATTTAGCAGCTCTTAAGTACTGGGGCCCCACCGCTACGACCAACTTCCCTGTTTCCAACTATACAAAGGAATTGGAGGAGATGAAGCATGTAACAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGTAGCGGTTTTTCCAGGGGAGCTTCTATATACAGGGGTGTAACAAGGCATCACCAACAGGGTAGATGGCAGGCAAGAATTGGTCGTGTTGCAGGGAACAAAGATCTGTACCTCGGAACATTTGCCACTGAAGAGGAAGCAGCAGAGGCATACGATATTGCAGCCATAAAGTTTAGGGGGGTAAATGCAGTAACCAACTTTGAGATGAGCAGATATGATGTTGAAGCTATCATGAAGAGTTCACTTCCCATTGGTGGTGCAGCAAAACGCTTGAAGCTTTCCCTAGAATCAGAGCAGAAAGCAAGTTTGaacaacaataatattaataataatcagCAACTCCAATGTACGAACTTGAATAGCAGCATCAGCTTTTCACCCATTCAGCCAGTTGCTTCCTCTATCCCATGTGGGATTCCATATGACTCTGCAGCTGCATATTATCACCACAACTTCTTCCACCATTTTAATCCTACCAACGCTGAGTCTGCTGTATCTACTCTGTCTGCACCGCCCTCTGACTTCTTTATGTGGCCTCCTCATCAGTCCTATTGA 1095 0.4301 MNEWVWDGRTPGFLPHQSFMIDTDLMMCRHFAYVDCLPCLYPNLSSVHSITRYTYLTPKYCSLKSSDDLGLPFAFAFAFIRHPKLEFDHTTQPIFKFKILTIPCPDIDILGFSFAWNVARCISGCGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGVNAVTNFEMSRYDVEAIMKSSLPIGGAAKRLKLSLESEQKASLNNNNINNNQQLQCTNLNSSISFSPIQPVASSIPCGIPYDSAAAYYHHNFFHHFNPTNAESAVSTLSAPPSDFFMWPPHQSY 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1221 364 SUPERFAMILY DNA-binding domain 127 156 IPR016177 GO:0003677
Sto11g1221 364 CDD AP2 189 250 IPR001471 GO:0003700|GO:0006355
Sto11g1221 364 SUPERFAMILY DNA-binding domain 189 250 IPR016177 GO:0003677
Sto11g1221 364 ProSiteProfiles AP2/ERF domain profile. 190 248 IPR001471 GO:0003700|GO:0006355
Sto11g1221 364 Gene3D AP2/ERF domain 190 250 IPR036955 GO:0003700|GO:0006355
Sto11g1221 364 Gene3D AP2/ERF domain 113 156 IPR036955 GO:0003700|GO:0006355
Sto11g1221 364 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 124 342 - -
Sto11g1221 364 Pfam AP2 domain 190 240 IPR001471 GO:0003700|GO:0006355
Sto11g1221 364 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 124 342 - -
Sto11g1221 364 ProSiteProfiles AP2/ERF domain profile. 127 154 IPR001471 GO:0003700|GO:0006355
Sto11g1221 364 SMART rav1_2 118 160 IPR001471 GO:0003700|GO:0006355
Sto11g1221 364 SMART rav1_2 190 254 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1221 Sto-Chr11 12101995 12104325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1221 119 364 AP2-EREBP Transcription Factor Family AT5G65510 69.076 2.21e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto11g1221 AP2 2.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1221 K09285 - gmx:100775390 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4246 6 45486635 45490245 Sto11g1221 11 12101995 12104325 CCT