Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1209 ATGGCGGCATTTTCTTCATCGGCAACGGTTTTCGGAAATAGAGAAGACGATGATCAGATTCAGATGAAGCAGCTGCAACAACATAACTCCTTGACGCCATCTTCCTCAACAGCACCtcagaagaaaaagagaaaccaACCAGGAAACCCAAGCAAGTATCACCCAGctgatgaattaattaattttatcaaaatatctaatataattaatctattaattattatttttggggcGGGGCGAGTAATGGGCGATCCAGATGCGGAGGTGATAGCAGTATCTCCCAAGAGCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGTAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTGCACAGAAGAGGACATAATCTGCCTTGGAAGCTAAAGCAGAAAAGTACAAAAGAGGGTGAGAAGGCCAAGAGGAAGGTTTATGTGTGTCCTGAGCCCACATGCGTGCATCATGACCCTTCAAGGGCTCTGGGTGACCTCACTGGGATTAAGAAGCATTACTCTCGCAAGCACGGCCACAAGAACTGGATCTGCCATAAGTGCTCTAAGAAGTATGCTGTTCAATCTGACTGGAAAGCCCATTCCAAGACTTGTGGCACCAGAGAGTATAGATGTCACTGTGCTACTATCTTCTCCAGACGAGAGAGCTTGATAAGGCACAGGGCGTTGTGCGATGCGTTGGGTGAGGAAAGTATAAGAGAAGGAGGTGCAGCGAATGTGATGATGTATGGAAGTAGCAGCAGCAGCGTGGCTGATATTGATGAGTATAGTATGAGTATGAGTGGTGGCCACCAGCTTCTCCCACaaaccaataataataataataatatgaatatGTTCATTATCCCACCTCAATCCAATCAAACCATATACTCTCAACTTCAACTGCCGACGAGCAATGATAATTCTACATTATCTCCACCTAATAACCTCTTCAGTACCCTTCCCTTCTTTTCCAATGAACCCTCCATAATGCCAAATATTCACCACACAACCTCTTCTCTTCTCACCAACATGAATTATATCCCTCAAATGTCGGCAACCGCACTTCTCCAGAAAGCTGCTCAAATGGGTGCAACTTCTTCAACCACCAACGTTAACGCTACTACCTTATTAGGATCAACCACTTCCTCTACTCATCATAACGacctcatcatcatcaactcATCATTTGGGATTGGGACTAACAACCCAACCTCTTTGCAAAGTATGAGcatgaataataatattattggaaACTCAGGGGGGCTTACCAGGGACTTTCTAGGTGTTGGCCACAATATTCTCACAACCATCACTACTACTtctcaacaacaacaaccaccTCCACACACAACTTTTGGAGGAGGTGGATCAAATTTTCAGTTCCCTCACTAG 1395 0.4043 MAAFSSSATVFGNREDDDQIQMKQLQQHNSLTPSSSTAPQKKKRNQPGNPSKYHPADELINFIKISNIINLLIIIFGAGRVMGDPDAEVIAVSPKSLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEGEKAKRKVYVCPEPTCVHHDPSRALGDLTGIKKHYSRKHGHKNWICHKCSKKYAVQSDWKAHSKTCGTREYRCHCATIFSRRESLIRHRALCDALGEESIREGGAANVMMYGSSSSSVADIDEYSMSMSGGHQLLPQTNNNNNNMNMFIIPPQSNQTIYSQLQLPTSNDNSTLSPPNNLFSTLPFFSNEPSIMPNIHHTTSSLLTNMNYIPQMSATALLQKAAQMGATSSTTNVNATTLLGSTTSSTHHNDLIIINSSFGIGTNNPTSLQSMSMNNNIIGNSGGLTRDFLGVGHNILTTITTTSQQQQPPPHTTFGGGGSNFQFPH 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1209 464 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Sto11g1209 464 MobiDBLite consensus disorder prediction 23 46 - -
Sto11g1209 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 125 IPR013087 -
Sto11g1209 464 Pfam Zinc-finger double-stranded RNA-binding 103 125 IPR022755 -
Sto11g1209 464 SMART c2h2final6 103 125 IPR013087 -
Sto11g1209 464 SMART c2h2final6 147 177 IPR013087 -
Sto11g1209 464 SMART c2h2final6 182 202 IPR013087 -
Sto11g1209 464 MobiDBLite consensus disorder prediction 1 53 - -
Sto11g1209 464 MobiDBLite consensus disorder prediction 440 464 - -
Sto11g1209 464 Gene3D Classic Zinc Finger 103 143 - -
Sto11g1209 464 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 333 - -
Sto11g1209 464 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 343 404 - -
Sto11g1209 464 SUPERFAMILY beta-beta-alpha zinc fingers 102 202 IPR036236 -
Sto11g1209 464 Gene3D Classic Zinc Finger 144 230 - -
Sto11g1209 464 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 333 - -
Sto11g1209 464 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 343 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1209 Sto-Chr11 12003996 12006314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1209 12 430 IDZ Gene Family AT1G55110 43.213 9.70e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto11g1209 zf-C2H2_jaz 2.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1209 K25870 - gmx:100786121 352.443