Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1178 ATGGAGCCACCACAAACCAGACCCAAAGACGAAAAGCAGACCAGAACACCGAGAAACCCAGAAGAAGTCAAAACAGAGCACCaaaaatcccaaaaaaaaaattcaaagcaGAGCAGAACCCCACCACCGTCACCGGAAAACCACCATACACGGCGCTGCGTCACCGTCCAGAGTGTCCACGAGCACCTGCGTACGCCTCTGTCAAAACCTTTGAACGAACGGAGGCGAGAAACGGAGAAAAACTCGAAACAGATGAAAACGCGTCCTCGCCGTCGCCGGGAAACCACCGTACACGGCGCTGCGTCGCCGTCCAGTGTCCACGAGCACCGTCGTACGCCTCTATCAGAGAGCAGAGGCGAGAAACGAAGAAACAATCGAAGCAGAGGAAATTGCGTCCTCTCAGTCCGGGAAGACGTCCGGCCAAGAAATAGAACGGGAAAATTGGAAATCTGGAATCTTCCTAGAGATGACATAAGAGCAAATAAGCTACTGATGAAAGCAAGTCAGTTCGATTCAATGGTTTTACTTCGGCAGGGCATGCAGCAATTTCGAAATTACTACAACTCAGAAGCTCACATGTTAAGAAGTAGATTTGCTCGAGGAACTATCTCAGAGACATATAAAAACTCGTTCTTAAAACCAAAAGCGAAGTCAGAGATCAAACTACTCACTGCGAAGAAACACAGTGAAGCAGAGAAGAGACGTAGAATGCGAATCAATGGTCAATATGCCGCCCTTCGCATCCTCCTGCCCGACTTGATCAAAATGGACAAGGCATCAGTACTGGCGGAGACTATAAGGCAATTGAAGGAGCTAAAGGTCAATGTATCAGAACTGGAAGCTGTTAGTGGTGGTACCTCAGGTGAGATAACTGTGTTTCCCAGTGGGGCAGACAAGTTGAACGTAGAACATTGTAATGATGAGCAGGGCCTCGTGAAGGCTACATTGAGTTGTGAGGATAGGCCAGGCTTGATGTCGGCCATCACAAGGGCACTTAGATCAGTGAAAGCCAAGGTGGTAAAGGCTGAGATGGTGACAGTAGGAGGGAGAACCAGAAATGTGTTGTGGGTGCAAGGCTTGGGAAATGGAAATGAAGGGATGGGGGTTCTGAAGCGGACTTTGAAGGTTGTCATGCACAGGCCAAACTTTAAGATGCAGCATTTGACTCGATAA 1173 0.4783 MEPPQTRPKDEKQTRTPRNPEEVKTEHQKSQKKNSKQSRTPPPSPENHHTRRCVTVQSVHEHLRTPLSKPLNERRRETEKNSKQMKTRPRRRRETTVHGAASPSSVHEHRRTPLSESRGEKRRNNRSRGNCVLSVREDVRPRNRTGKLEIWNLPRDDIRANKLLMKASQFDSMVLLRQGMQQFRNYYNSEAHMLRSRFARGTISETYKNSFLKPKAKSEIKLLTAKKHSEAEKRRRMRINGQYAALRILLPDLIKMDKASVLAETIRQLKELKVNVSELEAVSGGTSGEITVFPSGADKLNVEHCNDEQGLVKATLSCEDRPGLMSAITRALRSVKAKVVKAEMVTVGGRTRNVLWVQGLGNGNEGMGVLKRTLKVVMHRPNFKMQHLTR 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1178 390 Coils Coil 262 282 - -
Sto11g1178 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 223 272 IPR011598 GO:0046983
Sto11g1178 390 Pfam Helix-loop-helix DNA-binding domain 227 272 IPR011598 GO:0046983
Sto11g1178 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 291 IPR036638 GO:0046983
Sto11g1178 390 MobiDBLite consensus disorder prediction 66 84 - -
Sto11g1178 390 MobiDBLite consensus disorder prediction 1 33 - -
Sto11g1178 390 CDD ACT_UUR-ACR-like 315 359 - -
Sto11g1178 390 Gene3D - 312 386 - -
Sto11g1178 390 MobiDBLite consensus disorder prediction 1 132 - -
Sto11g1178 390 MobiDBLite consensus disorder prediction 109 132 - -
Sto11g1178 390 SMART finulus 229 278 IPR011598 GO:0046983
Sto11g1178 390 SUPERFAMILY ACT-like 314 384 IPR045865 -
Sto11g1178 390 PANTHER TRANSCRIPTION FACTOR BHLH131 183 385 - -
Sto11g1178 390 Gene3D - 219 283 IPR036638 GO:0046983
Sto11g1178 390 PANTHER TRANSCRIPTION FACTOR BHLH30 183 385 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1178 Sto-Chr11 11684859 11688440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1178 222 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.116 3.99e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto11g1178 HLH 7.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1178 - - gmx:102662951 271.552