Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1167 ATGGAAGAAGCCCTGAGGAGGCTGAACGGCCAAACCCCCATTCCCGAACCGAACCCGAAGCCGTCTGGGAAGCGCCCCGTCAGAGAAAACGGTGGCACCATAAGGTACCGAGGAGTGAGGCGCAGGCCATGGGGGCGTTACGCGGCGGAGATTAGGGACCCACAATCGAAGGAGCGGCGGTGGCTGGGGACCTTCGACACAGCGGAGGAAGCGGCGTGCGCCTACGACTGCGCGGCCCGAGCCATGCGGGGGGTGAAGGCGCGGACGAATTTCGTGTACCCCACAGGCACAGGATCCCCATCTCCTCCTCATTTGTGCTTTCCGCTTATGAATAACAAGCAGCGCCATTTCCCTGATTCCTCCATCAACCTCAACATGCTTCTCTTCCGTGACTACATCAACTCTGCCTCCAATCCCCACttttactcttcttcttcttcttctgctccCTCCTCCCACCTCACTACTGAACCTGCTGATCACTCTGAATTCTTTCCCAGGGATTCCTCTGACTCTGGACTCTTGGAGGAGATTGTTCACAAGAATATAATCCCGCCCGTGTGCTTGCATCTTAAAGCTAGACTTAATTGA 591 0.5415 MEEALRRLNGQTPIPEPNPKPSGKRPVRENGGTIRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGVKARTNFVYPTGTGSPSPPHLCFPLMNNKQRHFPDSSINLNMLLFRDYINSASNPHFYSSSSSSAPSSHLTTEPADHSEFFPRDSSDSGLLEEIVHKNIIPPVCLHLKARLN 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1167 196 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 114 - -
Sto11g1167 196 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 146 183 - -
Sto11g1167 196 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Sto11g1167 196 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Sto11g1167 196 MobiDBLite consensus disorder prediction 144 166 - -
Sto11g1167 196 MobiDBLite consensus disorder prediction 1 36 - -
Sto11g1167 196 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Sto11g1167 196 CDD AP2 35 91 IPR001471 GO:0003700|GO:0006355
Sto11g1167 196 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Sto11g1167 196 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Sto11g1167 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 23 114 - -
Sto11g1167 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 146 183 - -
Sto11g1167 196 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Sto11g1167 196 MobiDBLite consensus disorder prediction 144 158 - -
Sto11g1167 196 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1167 Sto-Chr11 11592016 11593175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1167 1 181 AP2-EREBP Transcription Factor Family AT1G12980 43.043 9.35e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto11g1167 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1167 - - gmx:102661952 170.244