Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1144 ATGGACGAAATCTACGGAGTGCCCTTGACCTTGACGGCCGACTACTCCGACAAGGCCTTGATGACGCCCGACAACCTCATCTTCGCTGCCGATTACCAGAGCTTTCTCATGTCTTCCGCCGGTTCCCGTGATCGGAATCCCATGTTCGGATCCGACGACTTCCTCTCCGCCGTCACCCAAGCTGAGCCGCCGTCGTCTATACCTTCTGAAATTCAGCGCCAAGACGACGCCGCCTCCGCTATCATCAAAGCCAAAATTGCTTCTCATCCTCACTATCCTCGCCTCCTCCAAGCTTACATCGATTGCCAGAAGGTAGGAGCACCTCCGGAAATCGCGTGTTTGTTAGACGAAATCAGGCGAGAAAACGACCTGTGCAAGCGGGACGTTGTTTCCACGTGTTTCGGTGCCGATCCCGAGCTCGACGAGTTTATGGAAACCTACTGCGATCTGCTGGTGAAGTATAAATCAGATCTTGCGCGGCCTTTTGATGATGCAACTTCTTTCCTCAATAAGATCGAAACACAGCTCACCCATCTCTGTTCTGCTGCTTCCCTTCTCAGCCTTTCCGATGATGGGGGTGCCTCTTCAGAAGAAGATTTGAGTGCAGGAGATGTGGATGGTCAAGATGTTCAATTGCGGTGTGAAGATCGAGAGCTTAAAGATAGACTTCTTCACAAGTTTGGTAGTCATATTAGTTCATTGAAATTAGAGTTCtcgaagaaaaagaagaagggtaAGCTACCAAAAGAAGCGAGGCAAACACTTCTTCAGTGGTGGAATGTTCATTACAAATGGCCTTACCCAACGGAAGCTGATAAGATAGCACTGGCTAAGTCAACGGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAAAGCGCCACTGGAAACCGTCTGAGAACATGCAGTTTTCCGTGGTGGATAATCTGACCGCACGATTCTTGAGCGATGCATGA 966 0.4814 MDEIYGVPLTLTADYSDKALMTPDNLIFAADYQSFLMSSAGSRDRNPMFGSDDFLSAVTQAEPPSSIPSEIQRQDDAASAIIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLDEIRRENDLCKRDVVSTCFGADPELDEFMETYCDLLVKYKSDLARPFDDATSFLNKIETQLTHLCSAASLLSLSDDGGASSEEDLSAGDVDGQDVQLRCEDRELKDRLLHKFGSHISSLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIALAKSTGLDQKQINNWFINQRKRHWKPSENMQFSVVDNLTARFLSDA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1144 321 SMART HOX_1 240 305 IPR001356 GO:0003677
Sto11g1144 321 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Sto11g1144 321 Pfam ELK domain 218 239 IPR005539 GO:0003677
Sto11g1144 321 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 311 - -
Sto11g1144 321 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 311 - -
Sto11g1144 321 SUPERFAMILY Homeodomain-like 239 311 IPR009057 -
Sto11g1144 321 SMART ELK_2 218 239 IPR005539 GO:0003677
Sto11g1144 321 ProSitePatterns 'Homeobox' domain signature. 276 299 IPR017970 GO:0000981|GO:0006355
Sto11g1144 321 ProSiteProfiles ELK domain profile. 218 238 IPR005539 GO:0003677
Sto11g1144 321 Pfam Homeobox KN domain 258 297 IPR008422 GO:0003677|GO:0006355
Sto11g1144 321 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Sto11g1144 321 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Sto11g1144 321 ProSiteProfiles 'Homeobox' domain profile. 238 301 IPR001356 GO:0003677
Sto11g1144 321 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677|GO:0005634
Sto11g1144 321 CDD homeodomain 250 302 IPR001356 GO:0003677
Sto11g1144 321 Gene3D - 236 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1144 Sto-Chr11 11418603 11424131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1144 1 320 Homeobox Transcription Factor Family AT1G23380 65.152 2.96e-144 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sto11g1144 KNOX2 1.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1144 - - gmx:100803730 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4307 6 45829294 45838014 Sto11g1144 11 11418603 11424131 CCT
Sto11g1144 11 11418603 11424131 Sto11g1144 11 11418603 11424131 ECH