Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1133 ATGCAGATCTTCGTGAAGACCCTCACAGGGAAGACCATAACACTCGAGGTTGAGTCCTCGGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTAGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTCCGTGGTGGAGCCAAGAAGCGTAAGAAGAAGACCTACACTAAGCCCAAGAAGATcaagcacaagaagaagaaggtcaAGCTCTCCGTGCTCCAGTTCTACAAGGTCGATGATTCAGGTAAGGTCCAGAGGCTCAGGAAGGAGTGCCCCAACGCTGAGTGTGGAGCTGGAACTTTCATGGCCAACCACTTTGATCGACACTACTGTGGCAAGTGTGGGATGACTTATGTCTACCAGAAGGCCGGTGATCATACGGGTGAGGAGCATATCATGAGAACACTTGAGCATAGTTTAATTGATAAATTAGATATTGCTTCGGGTGAAAAGGTCAGTGTTCCATGCAATAGCTTATCAATGGTGGTGACAGTGAGGTGTGGACACTGCACAACCCTCCTTTCAGTTAACATGATGAAAGCTTCTTTTGTCCCTTTTCACCTTTTGGCTTCCCTTACTCATCTTGAGCCCAAAGAATGTAGTCCAGAAGAAGATGCAAACAAGACTTGTTCTGATGAAGATGAGGCAATTTCAATGAGATATGTCATTAATAAACCCCCAGAGAAGAGACAAAGAACACCATCAGCTTATAATCGCTTTATCAAAGAAGAGATCAGAAGGCTAAAAGCTGAAAACCCTGAAATGGCCCACAAGGAAGCTTTCAGTACAGCAgcaaaaaatTGGGCCAATTTCCCCCAAGTACATTTCAGAGGAGATGATGAGAGTTGTAGCCAAATAGAGAAAATTGTGGATATGGACCCCCATGATCATGATGCTGAGAAAGATGCTCTTGGTGGGAATGGAAAGCTATAA 1023 0.4565 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGMTYVYQKAGDHTGEEHIMRTLEHSLIDKLDIASGEKVSVPCNSLSMVVTVRCGHCTTLLSVNMMKASFVPFHLLASLTHLEPKECSPEEDANKTCSDEDEAISMRYVINKPPEKRQRTPSAYNRFIKEEIRRLKAENPEMAHKEAFSTAAKNWANFPQVHFRGDDESCSQIEKIVDMDPHDHDAEKDALGGNGKL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1133 340 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Sto11g1133 340 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Sto11g1133 340 Pfam YABBY protein 182 306 IPR006780 GO:0007275
Sto11g1133 340 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Sto11g1133 340 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Sto11g1133 340 SMART ubq_7 1 72 IPR000626 GO:0005515
Sto11g1133 340 PANTHER UBIQUITIN 1 146 - -
Sto11g1133 340 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 146 - -
Sto11g1133 340 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Sto11g1133 340 CDD Ubl_ubiquitin 1 76 - -
Sto11g1133 340 Gene3D - 1 80 - -
Sto11g1133 340 SUPERFAMILY HMG-box 252 302 IPR036910 -
Sto11g1133 340 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Sto11g1133 340 Gene3D High mobility group box domain 248 330 IPR036910 -
Sto11g1133 340 Gene3D - 81 156 IPR038582 -
Sto11g1133 340 MobiDBLite consensus disorder prediction 321 340 - -
Sto11g1133 340 PRINTS Ubiquitin signature 11 31 IPR019956 -
Sto11g1133 340 PRINTS Ubiquitin signature 32 52 IPR019956 -
Sto11g1133 340 PRINTS Ubiquitin signature 53 74 IPR019956 -
Sto11g1133 340 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1133 Sto-Chr11 11342619 11349980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1133 1 154 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 94.805 2.38e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Sto11g1133 YABBY 1.3e-45 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1133 K02977 - cit:102625746 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1133 11 11342619 11349980 Sto11g1133 11 11342619 11349980 ECH