Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1103 ATGTCTCGGGTTTATGTTGGGAATTTGGACCCTCGAGTCACTGAGAGGGACCTCGAAGATGAATTTCGTATCTACGGTGTTCTTCGGAGCGTCTGGGTTGCTCGAAGGCCACCAGGATATGCTTTTCTGGAATTTGATGACAGGAGGGATGCACTTGATGCAATTCATGCTTTGGATGGCAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGAGGACGTGGTGGacgtggtcgaggaggtgagGACATGAAATGTTATGAGTGTGGTGAGCCTGGTCATTTTGCTAGGGAGTGCCGCATGCGCATTGGTTCACGAGGCCTAGGAAGTGGACGGCGACGAAGCCCTAGTCCTTATCGTCGGCGTAGAAGTCCAAGTTATGGCCGCAGCTTCAGGAGTTATAGCCCTATTGGAAGAAGATCTCCTAGACACCGTAGCATAACACCTCCTCGACGTGGTCGCAGTTACAGCAGGTCCCCTCCATACCGTCACTCTCGTCGTGACTCTCCTTATGCCAATGGGTAG 537 0.4953 MSRVYVGNLDPRVTERDLEDEFRIYGVLRSVWVARRPPGYAFLEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGGRGGRGRGGEDMKCYECGEPGHFARECRMRIGSRGLGSGRRRSPSPYRRRRSPSYGRSFRSYSPIGRRSPRHRSITPPRRGRSYSRSPPYRHSRRDSPYANG 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1103 178 SMART rrm1_1 3 69 IPR000504 GO:0003723
Sto11g1103 178 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21 2 177 - -
Sto11g1103 178 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Sto11g1103 178 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Sto11g1103 178 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 177 - -
Sto11g1103 178 Gene3D - 2 69 IPR012677 -
Sto11g1103 178 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Sto11g1103 178 Gene3D - 77 131 - -
Sto11g1103 178 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Sto11g1103 178 CDD RRM_SRSF3_like 3 71 - -
Sto11g1103 178 MobiDBLite consensus disorder prediction 110 178 - -
Sto11g1103 178 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Sto11g1103 178 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Sto11g1103 178 SUPERFAMILY Retrovirus zinc finger-like domains 79 106 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1103 Sto-Chr11 11108277 11109577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1103 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 41.935 1.78e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1103 K12896 - tcc:18609404 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1103 11 11108277 11109577 Sto11g1103 11 11108277 11109577 ECH