Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1095 ATGTCTTGGGTTCACTATCAAATCCGTCAGAGCAATGGTGATATGACTACCCATCCTACTctttccccttcctcttcttcttcttcttctcctccattGCCCTACATTTCTAACTATCAGAAACAGTTAAGCCCACCtccagcttcttcttcttcttcttcatctggCAACAGAATAAGCCCAGCAGTTCTTTTCATCATAGTTGTTCTAGCTATTGTGTTTTTCATTTCTGGCCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCATAGATCTTCTTCATCAATTTCTCAATCCAACAGATACCCGGATATGTCTGAATCCGATGCTTATCAGAGGCAGTTGCAGCAGCTCTTTCACCTTCATGATTCAGGACTAGACCAGGCTTTTATAGATGCTCTTCCTGTGTTTCTCTATAAGGAGATAATAGGCTTGAAAGAGCCATTTGATTGTGCTGTTTGCCTTTGTGAATTCTCGGAACAGGACAAGCTGAGGTTGCTGCCTATGTGTAATCATGCTTTTCACATTGACTGTATAGACACATGGTTGTTGTCTAATTCAACTTGTCCTCTCTGTAGAGGCACTCTGTATGCTCCAGGATTTTCCTTTGAAAACCCAGTTTTTGACTTTGAAGATCCAAGGGAAGAAGATGGGGTTTCTGCAGGCAGTGCTGGGGTTGGGGTTGCTTCTGCCAACAAACCTGCAGAAAATCATATTATGAGTGGGAAAAGGGTGTTTTCTGTGAGACTTGGAAAATTTAGAAGCTCAAATACAAGAGAAGGAAtggaaagagctgaagATTTGGATGCAAGAAGATGCTATTCAATGGGGTCTTTCCAGTATGTGGTTGCTGATTCAGATTTAAGAGTAGCTCTATGTCGTAATACCAGAGCTGATGGGGGTAGTGGAAGTATGAGACAATTCAAAGTGAATCCTTCCACTGATGCAGACTTTGAAGGCAAAAAACTAAACATTGCAAGGAAAGGAGAAAGCTTCTCTGTTTCAAAGATCTGGCTATGGTCTAAGAAGGATAAATTACCAACTTCTTCTGCAACCCATATGGGAAATTCTACTACTGTCACTGCAAATATGCCATGGATGAATAGAACGAGAGGTACATGA 1122 0.3806 MSWVHYQIRQSNGDMTTHPTLSPSSSSSSSPPLPYISNYQKQLSPPPASSSSSSSGNRISPAVLFIIVVLAIVFFISGLLHLLVRFLIKHRSSSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIIGLKEPFDCAVCLCEFSEQDKLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGTLYAPGFSFENPVFDFEDPREEDGVSAGSAGVGVASANKPAENHIMSGKRVFSVRLGKFRSSNTREGMERAEDLDARRCYSMGSFQYVVADSDLRVALCRNTRADGGSGSMRQFKVNPSTDADFEGKKLNIARKGESFSVSKIWLWSKKDKLPTSSATHMGNSTTVTANMPWMNRTRGT 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1095 373 CDD RING-H2_PA-TM-RING 150 193 - -
Sto11g1095 373 Pfam Ring finger domain 150 193 IPR001841 -
Sto11g1095 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 198 IPR013083 -
Sto11g1095 373 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 360 - -
Sto11g1095 373 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Sto11g1095 373 SMART ring_2 151 192 IPR001841 -
Sto11g1095 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 360 - -
Sto11g1095 373 SUPERFAMILY RING/U-box 130 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1095 Sto-Chr11 11026750 11027901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1095 48 351 C3H Transcription Factor Family AT2G18650 40.469 8.10e-60 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1095 - - gmx:100818135 462.225