Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1073 atGATACTTTGCCGTTCTGCTTTGATGTTCCATCTCCAAATACCATCGATTCGCTCCCACGTCTTCTCCCGCTTCAAGCATACATACTCCTTCCTCTCTGCTTCTACTTCGCCTTCTTTGCTTAATGTTCGCTTCCTCTCGCTTACCCATCATCCTCGCCAACGCCAATCCAGGGCCTTCGGGAGCGCCGTCGCAGCCGTAGCAGATACAAAAGGGAGAGATACATTCTTGGCGGAGGAAAATGTGTCGTGGAATTCACTTGGTCTGTCTGATTCCATTTCCCGAGCTCTTTCTAACATTGGCCTCGACCGGCCGTCTCTGGTTCAGGCTTCTTCTATACCATCTGTGCTTTCTGGTAAGGATGTGGTTATTGCAGCAGAGACTGGCAGTGGTAAAACACACAGTTACCTAGTTCCTCTAATTGATAAGCTACGAGGTGCCCACCACAATTCCGAAAAGACTGCCCATAGTCAAGAAGAGTCTCTGCCCCATGAGGTTCTTCTTATTCTGTGTCCAAATGTACAACTGTGTGAACAAGTCGTTCGGATGGCTAACAGTCTTCACAGGGATAATAGTGAACCAATCGTTAGTGTGGCAGCCATTTGTGGCAGACAGGGATGGCCAACTCGTGAACCAGATGTCATCGTAACAACACCTGTTGCTCTTCTGAACTATGTTGACCAAAACAGACGCCGTCGATTGGAATTTATGCGTGGTGTAAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGTTTGATAAACTTGCTTCGCTTTGATGAAAAACTCTTGTCTCAAAGAAAAGAATCAATAGCAGAGTTGCCAGTGGAACAGGAATCTGCATTTTCATCAGACAGTGTTTTATCTGGTGAAGAGGAACAGCCGACTGAAGACACCATCTTAGAAGATGGGGATGATAATACTGAGAATATGGTTGATATCGAAAATGAAGCTGATTTTATCAAAAGAAGAGACTGGAGGAGGGTGAGGAAAAATTATGAGCGTAGTAAACAGTATGTTTTTGTTGCAGCCACCCTTCCTGTGAATGGAAAGAAAACAGCAGGAGCAGTACTAAAGCATATGTTTCCCGATGCCATATGGGTTAGTGGAAATTATCTTCATTGTCACAATCCAAGATTGGAGCAGAGATGGATTGAAGTTACAGTTGATACACAGGTAGATGAACTCATAAAGGCTGTCAGACAAGGATTTAAATATGAAGGTTTGAATAATGCTGGTGGCATTTGTCGAACAATGGTGTTTGCCAACACGGTTGAGGCTGTTGAAGCTGTGTCAAAGATATTGCACAGAGCTGGGATTGAATGTTTTCGCTATCATAAGGATTGCACCTTGGAGGTGCGAGCGAAAACCTTACTTGAATTCGAAGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAACATCTCACATGTTATACAGGCAGATTTTGCTAGTTCTGCTGTAGACTTCTTGCATAGGGTTGGTCGCACAGCTAGAGCCGGTCAATTTGGACTTGTTACTAGCATGTACACTGAATCTAACAGGGAGCTTGTCAATACAGTTCGTCGAGCAGGGGAACTCGGTCAACCAGTGGAGGCAGCATTTAGCAGGAAAAGAAGTTTCCGTAACAAGCTCAAGAAGAGGGGTGCTAACAACGTCAGAGATTCAGCTATTGTTAAAGAGAGCGCTCTTGCTTGA 1752 0.4452 MILCRSALMFHLQIPSIRSHVFSRFKHTYSFLSASTSPSLLNVRFLSLTHHPRQRQSRAFGSAVAAVADTKGRDTFLAEENVSWNSLGLSDSISRALSNIGLDRPSLVQASSIPSVLSGKDVVIAAETGSGKTHSYLVPLIDKLRGAHHNSEKTAHSQEESLPHEVLLILCPNVQLCEQVVRMANSLHRDNSEPIVSVAAICGRQGWPTREPDVIVTTPVALLNYVDQNRRRRLEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSQRKESIAELPVEQESAFSSDSVLSGEEEQPTEDTILEDGDDNTENMVDIENEADFIKRRDWRRVRKNYERSKQYVFVAATLPVNGKKTAGAVLKHMFPDAIWVSGNYLHCHNPRLEQRWIEVTVDTQVDELIKAVRQGFKYEGLNNAGGICRTMVFANTVEAVEAVSKILHRAGIECFRYHKDCTLEVRAKTLLEFEEKGGVLVCTDAAARGVDIPNISHVIQADFASSAVDFLHRVGRTARAGQFGLVTSMYTESNRELVNTVRRAGELGQPVEAAFSRKRSFRNKLKKRGANNVRDSAIVKESALA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1073 583 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Sto11g1073 583 SMART helicmild6 439 519 IPR001650 -
Sto11g1073 583 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 567 IPR001650 -
Sto11g1073 583 SMART ultradead3 101 393 IPR014001 -
Sto11g1073 583 CDD SF2_C_DEAD 390 528 - -
Sto11g1073 583 CDD DEADc 93 274 - -
Sto11g1073 583 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 50 559 - -
Sto11g1073 583 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 50 559 - -
Sto11g1073 583 Pfam Helicase conserved C-terminal domain 427 519 IPR001650 -
Sto11g1073 583 MobiDBLite consensus disorder prediction 301 318 - -
Sto11g1073 583 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 374 IPR014001 -
Sto11g1073 583 Gene3D - 50 373 IPR027417 -
Sto11g1073 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 531 IPR027417 -
Sto11g1073 583 Pfam DEAD/DEAH box helicase 108 273 IPR011545 GO:0003676|GO:0005524
Sto11g1073 583 MobiDBLite consensus disorder prediction 292 318 - -
Sto11g1073 583 Gene3D - 394 582 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1073 Sto-Chr11 10891548 10895424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1073 333 545 Eukaryotic Initiation Factors Gene Family AT5G11200 25.820 3.50e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1073 - - gmx:100780518 841.262