Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1070 ATGGAAAGGGATTTTGTTTGTGATGTTTCTTCAACGTGGGATAATGGAGAAAATGGCCATTCTTCTGTGGAGAAGAGGCTAAGGTTATTTGGGTTTGAGCTGAACCCATCTAAGAACAACAAGGAAGGCTGTGTTAATAAAGAATCTGTGGAAGGGGATGAAAGTGTGAACTCCTCAAACTCTGTTTCATCAGGAGGAGAGAAAACTGATCAGCAAGAGAAGAGTTCATCAGCCACAAGAGATCATCCATCATCAGATGAGAGGAAGTTCGAGTGCCAATACTGTTTCAAGGAATTTGCAAACTCACAAGCATTAGGAGGCCATCAAAATGCACACAAGAAAgagaggatgaagaagaagaggctTCAGCTTCAAGCAAGGAAGGCTAGCTTAAGCTATTATCTTCATCCTTTTCAAACCAACCCTGGTTTTGGCTACCATGCCTCTAATACTACTCCTAATTGGTTCTATGACCCCTCTTCCTATAATAACTCTGAGTTTTCTTTGCATGAAGAATCCCAGATTAGCTTCAATTCAAATCATGATCAAGATGCCATTAACATTCTTAATGGTTTTGATCTGAAATCAAAGTGGTATCCTTATCCTCCTCCTCAACAACAAGACACTTGTATGTTCACTTTATCACATACAGATAATAAGCCTTTCATCTTCCCTGCTGCTTCAAACCAGATCCATAGTAATAATAAAGCTTTGGATCTTCAACTAGGCCTCAATTTGCAGTCTAATACAAGAGACTCTCTAAGAAGGACGTGA 774 0.3837 MERDFVCDVSSTWDNGENGHSSVEKRLRLFGFELNPSKNNKEGCVNKESVEGDESVNSSNSVSSGGEKTDQQEKSSSATRDHPSSDERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASLSYYLHPFQTNPGFGYHASNTTPNWFYDPSSYNNSEFSLHEESQISFNSNHDQDAINILNGFDLKSKWYPYPPPQQQDTCMFTLSHTDNKPFIFPAASNQIHSNNKALDLQLGLNLQSNTRDSLRRT 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1070 257 Gene3D Classic Zinc Finger 62 136 - -
Sto11g1070 257 MobiDBLite consensus disorder prediction 1 20 - -
Sto11g1070 257 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Sto11g1070 257 MobiDBLite consensus disorder prediction 51 72 - -
Sto11g1070 257 SUPERFAMILY beta-beta-alpha zinc fingers 86 117 IPR036236 -
Sto11g1070 257 PANTHER ZINC FINGER PROTEIN 5 18 247 IPR044299 GO:0010090
Sto11g1070 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Sto11g1070 257 MobiDBLite consensus disorder prediction 34 85 - -
Sto11g1070 257 PANTHER ZINC FINGER PROTEIN 5 18 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1070 Sto-Chr11 10856979 10857752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1070 88 180 C2H2 Transcription Factor Family AT1G10480 51.000 3.33e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto11g1070 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1070 - - gmx:100527006 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1070 11 10856979 10857752 Sto11g1070 11 10856979 10857752 ECH