Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1057 ATGAAGAGGTCTAGAGACGATGGTTATATGAGCTCTCAACTCAAGCGGCCTATGGTGTCTTCCCGAGGAGAAGCTTCCGGGCAACCCCAGATGATGGTTGGAGGTGCTCAGAAACTTACTACAAATGATGCCTTAGCGTATCTCAAGGCAGTAAAGGAAATATTTCAAGATAATAGggaaaaatatgatgattttttGGAAGTCATGAAGGATTTCAAGGCTCAAAGagTTGATACTGTGGGCGTCATAGCAAGAGTGAAGGAATTGTTTAAAGGTCATAGAGATCTCATTTTGGGATTTAATACCTTCTTGCCGAAGGGATTTGAAATCACACTGCCATTGGATGATGAACAACCTCTGCAAAAGAAGCCTGTTGAATTTGAAGAAGCCATAAATTTTGTGAACAAAATTAAGTCTCGGTTTCAAGGTGATGATCATGTCTACAAGTCATTTCTAGACATACTGAATATGTACAGAAAGGAAAACAAGTCTATTTCTGAGGTCTACCAGGAGGTTGCTTCACTTTTCCATGACCACCCAGACCTTCTTGATGAATTTACCCACTTTCTTCCCGATAATTCAGCAACAGCATCTACACATAATGGTCCTTCTGCTCGGAATTCTATGCTTCGTGATAGAAGCTCTGCAATGCCAACAGTGAGGCAAATGCATGTTGAAAAGAGAGAAAGGACCATGGCTTCACAGGGTGATCATGACCTTAGTGTTGATCCTCCTGATCCTGATAATGACAGAGTTTTGACTAAGGCAGAAAAGGAGCAGAGGAGGCGTGTTGAGAAGGAAAAGGACCTCAGGGAAGAGAGGGATAGGAGAGAACGGGAACAGGATGATAGAAATTATGGGCATGATGGTAGCCGGGACTTTTCTATGCAACGTTTTCTCCACAAACGGAAATCTGGTCGTAGAACTGAAGACGCCGGTGCTGAACCATTGCATCAAGCTGGTGATTCTGATGAAAATTTCAGCATGCGACCTATGTCATCCACTTGCGATGACAAAAGTTCTGTGAAAAGTATGTATAGTGAAGAGTTTGCTTTCTGTGAGAAAGTCAAGGAGAAATTACGAAATTCTGATGTTTATCAGGAGTTTTTGAAGTgtttacatatatatagcagGGAAATAATTACCCGACAAGAATTGGAGTCCTTGGTGGGTGATTTGCTGGGAAAGTATCCAGACCTAATGGAGGGGTTTAATGAGTTTTTGTCTAGATGTGAGAAGAATGATGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTTTGGAATGAAGGGCTTGCATCCAAACCAGCGAAGGTAGAGGACAAGGATAGAGATAGAGGTCGAGATCATGATCGGGATAACCGTGTTAAAGAAAGAGATCGTGAACTTCGAGAAAGGGACAAATCTGCTGCTTTCATTAACAAGGACATTTCAGTCCCTAAAATGTCTCCATTTTCCAGCAAGGATAAGTATTGGTACAAACCTATAAATGAGCTAGACCTTTCTAACTGTGACCAATGCACTCCCAGCTACCGTCTCCTACCAAAAAACTACCCAATACCCTTAGCTAGCCAGAGAACCGAGCTTGGTGCTGAAGTATTGAATGATCAATGGGTTTCTGTCACTTCAGGAAGTGAGGattattcttttaaacacaTGCGTAAAAATCAGTATGAGGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTGACGACCAAGCGAGTAGAAGAGCTGTTAGAAAAGATcaataataacattattaaaGCAGATAGTCCAATTCGTATTGAGGATCACTTGACAGCTCTAAATCGAAGGTGCATCGAACGATTATATGGTGACCATGCACTCGATGCAATAGAGGTATTAAGAAAGAATGCACCTCTAGCTTTGCCAGTAATATTAACTCGTTTGAAGCAGAAACAAGAAGAGTGGGCTAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATTCTAAGAACTATCACAAATCTCTTGATCACCGTAGCTTCTACTTTAAGCAACAGGATACAAAAAACTTGAGCACCAAAGCCTTACTGACTGAAATCAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCCGGAAACAGACGGCCAATTATTCCAAATTTGGAATTTGAGTATCCTGATCAAGATATTCATGAAGATCTTTATCAACTCATAAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAATTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACCCCAGGGTGCTGAGGATACAGAAGATGTTGTCAAAGCTAAACATAATTCTGTCAAATGTGGCACTGCAAGTATTGCTGACAGTGATGGTAGTGGTGTAGGGGCAAATGTAATGAATCCTAAACAATTAAATACATCCGGAAATGGGgatgagagtatttcattagaACAATCAAATTCTTGGACTGAAGTTTTGGGTTATAGTACACAACACGATGGAATGCATACTAATGCATCCATGGCTAATGAAGTATCAGGAGTCAAGAAGCAAGGTCATTCCAATGAACAGTTAGTGAATGCTAATTCCACTCTGGCTTCTGGAATGGAACAAAATAATGGGAGGGCAAGCATAGATAATGCATCAGGACTTGCAGCTACTCCATCTAGACCTGGTAATGTTGCTGCTGAGGGAGGACTTGATTTACCTTCATCAGAGGGTGGTGATTCTACAAGACCAGTTACACCTACAAATGGGGCCATCGCTGAAGGCAGCAAAGTTCCCAGATACCAAGAAGAATCTGTAGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGCTATCTCCTAATGGAGATTTTGAGGATAACTTTGCAATTTATGGGGATACGGATTTAACAGCAGCAGGGCATAAAGGAAAGAATGGTGGTGTGACTATGCAATACCAAAATAGACATGGAGAAGAAGGTTGTGGAGAGGCAGGAGGAGAAAATGATGCTGATGATGAAGGAAGTCACCGCAGGTCATCAGAGGACAGTGAGAATGCTTCTGAAAATGGTCATGTTTTTGGAAGTGAGTCTGCTGATGGGGAGTGTTCACGGGAAGAGCATGAGGAAGATGGGGAACACGAACATGATAACAAGGCTGAGAgtgaaggtgaaggtgaaggCATGGCCGATGCCAATGATGTGGAAGGAGACGGAACCTCATTGCCATTTTCAGAACGATTTTTACTATCTGTAAAGCCCCTGGCAAAGCATGTTCCCCCAGTATTACATGAGAAAGAAAGGGTTTCTCGAGTTTTTTATGGAAATGATTCCTTTTATGTGCTTTTTAGGCTTCACCAAACATTGTATGAAAGGATACAATCAGCAAAGTTAAATTCATCATCTGCAGAAAGGAAGTGGAGGGCTTCAAATGATGCAAACTCTAGTGATCTATATGGCAGATTCATGACTGCCCTTTATAATCTACTGGATGGTTCTTCTGACAACGCAAAATTTGAGGATGATTGCCGAGCTATTATTGGAACTCAATCATATGTGTTGTTCACATTAGACAAATTGATTTTTAAACTTGTTAAACAGcTGCAAGCTGTTGTCACTGATGAAATGGATAATAAGCTTCTTCAACTCCATTCATATGAGAAATCAAGAAAACCTGGAAGATTTTTTGATATAGTTTACCATGAAAATGCCCGTGTTCTTCTTCATGACGAGAACATATATCGTATTGAATGTTCATCTACACCGACACGACTGTATATTCAACTGATGGACTATGGACATGATAAGCCTGAAGCAACGGCTGTATCTATGGACCCTAATTTTTCAGCCTATCTGCATAATGACTTCCTTTCTGTTGTTCCTGAAAAAAAGAAGTCGGGGATTTTCTTGAAGAGgaataaaagtagatatgCCTGTGGTGATGAACTTTCAAGCCAGGCTATGGAAGGACTGCAAGTTATTAATGGTTTGGAGTGTAAGATAGCTTGCAATTCATCTAAGGTTTCGTATGTTCTGGATACTGAAGACTTTTTATTTCGGATGAGAAGGAAAAGGAAAGCTTTGCATCAGAACAGTTCATGCCATGAACAGGCAAATTCTTCAGACAAATGTTCAAGCAGATTACAGCGGTTCCGCAGATTGTTTTCCGTCACATAA 4221 0.3966 MKRSRDDGYMSSQLKRPMVSSRGEASGQPQMMVGGAQKLTTNDALAYLKAVKEIFQDNREKYDDFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGFEITLPLDDEQPLQKKPVEFEEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVASLFHDHPDLLDEFTHFLPDNSATASTHNGPSARNSMLRDRSSAMPTVRQMHVEKRERTMASQGDHDLSVDPPDPDNDRVLTKAEKEQRRRVEKEKDLREERDRREREQDDRNYGHDGSRDFSMQRFLHKRKSGRRTEDAGAEPLHQAGDSDENFSMRPMSSTCDDKSSVKSMYSEEFAFCEKVKEKLRNSDVYQEFLKCLHIYSREIITRQELESLVGDLLGKYPDLMEGFNEFLSRCEKNDGFLAGVMNKKSFWNEGLASKPAKVEDKDRDRGRDHDRDNRVKERDRELRERDKSAAFINKDISVPKMSPFSSKDKYWYKPINELDLSNCDQCTPSYRLLPKNYPIPLASQRTELGAEVLNDQWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIIKADSPIRIEDHLTALNRRCIERLYGDHALDAIEVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYSKNYHKSLDHRSFYFKQQDTKNLSTKALLTEIKEISEKKRKEDDVLLAIAAGNRRPIIPNLEFEYPDQDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAKHNSVKCGTASIADSDGSGVGANVMNPKQLNTSGNGDESISLEQSNSWTEVLGYSTQHDGMHTNASMANEVSGVKKQGHSNEQLVNANSTLASGMEQNNGRASIDNASGLAATPSRPGNVAAEGGLDLPSSEGGDSTRPVTPTNGAIAEGSKVPRYQEESVGHFKSEREEGELSPNGDFEDNFAIYGDTDLTAAGHKGKNGGVTMQYQNRHGEEGCGEAGGENDADDEGSHRRSSEDSENASENGHVFGSESADGECSREEHEEDGEHEHDNKAESEGEGEGMADANDVEGDGTSLPFSERFLLSVKPLAKHVPPVLHEKERVSRVFYGNDSFYVLFRLHQTLYERIQSAKLNSSSAERKWRASNDANSSDLYGRFMTALYNLLDGSSDNAKFEDDCRAIIGTQSYVLFTLDKLIFKLVKQLQAVVTDEMDNKLLQLHSYEKSRKPGRFFDIVYHENARVLLHDENIYRIECSSTPTRLYIQLMDYGHDKPEATAVSMDPNFSAYLHNDFLSVVPEKKKSGIFLKRNKSRYACGDELSSQAMEGLQVINGLECKIACNSSKVSYVLDTEDFLFRMRRKRKALHQNSSCHEQANSSDKCSSRLQRFRRLFSVT 1406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1057 1406 MobiDBLite consensus disorder prediction 1047 1074 - -
Sto11g1057 1406 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Sto11g1057 1406 MobiDBLite consensus disorder prediction 950 969 - -
Sto11g1057 1406 Pfam C-terminal domain of Sin3a protein 1121 1366 IPR031693 -
Sto11g1057 1406 MobiDBLite consensus disorder prediction 1018 1034 - -
Sto11g1057 1406 MobiDBLite consensus disorder prediction 889 907 - -
Sto11g1057 1406 ProSiteProfiles PAH domain profile. 342 411 IPR003822 GO:0006355
Sto11g1057 1406 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1384 - -
Sto11g1057 1406 MobiDBLite consensus disorder prediction 222 318 - -
Sto11g1057 1406 MobiDBLite consensus disorder prediction 812 835 - -
Sto11g1057 1406 Coils Coil 256 283 - -
Sto11g1057 1406 MobiDBLite consensus disorder prediction 14 29 - -
Sto11g1057 1406 MobiDBLite consensus disorder prediction 987 1088 - -
Sto11g1057 1406 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Sto11g1057 1406 Pfam Paired amphipathic helix repeat 364 408 IPR003822 GO:0006355
Sto11g1057 1406 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Sto11g1057 1406 Coils Coil 576 596 - -
Sto11g1057 1406 SMART hdac_interact2seq4b 503 603 IPR013194 -
Sto11g1057 1406 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Sto11g1057 1406 Pfam Sin3 family co-repressor 506 596 IPR013194 -
Sto11g1057 1406 MobiDBLite consensus disorder prediction 194 215 - -
Sto11g1057 1406 MobiDBLite consensus disorder prediction 889 975 - -
Sto11g1057 1406 MobiDBLite consensus disorder prediction 816 835 - -
Sto11g1057 1406 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Sto11g1057 1406 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Sto11g1057 1406 PANTHER SIN3B-RELATED 1 1384 IPR039774 GO:0003714
Sto11g1057 1406 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Sto11g1057 1406 SUPERFAMILY PAH2 domain 342 409 IPR036600 GO:0006355
Sto11g1057 1406 MobiDBLite consensus disorder prediction 438 463 - -
Sto11g1057 1406 Gene3D Paired amphipathic helix 340 413 IPR036600 GO:0006355
Sto11g1057 1406 SUPERFAMILY PAH2 domain 120 192 IPR036600 GO:0006355
Sto11g1057 1406 MobiDBLite consensus disorder prediction 194 339 - -
Sto11g1057 1406 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1057 Sto-Chr11 10748906 10757128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1057 28 142 WRKY Transcription Factor Family AT4G12020 48.718 1.49e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto11g1057 Sin3a_C 5.9e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1057 K11644 - mnt:21394293 2110.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4379 6 46311103 46314580 Sto11g1057 11 10748906 10757128 CCT
Sto11g1057 11 10748906 10757128 Sto11g1057 11 10748906 10757128 ECH