Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1003 ATGGCTATTCCTATGTCCATGGCTTCAGGTCCCAAGGTTTACGCCTCTTTGCTCCAAAACGAACCCCTTACTTCTCCCTCTCACCTTCTTGACTCTCTCTGGGACCCCTCTTTTCAAGGTTCGAGTTCGAAGGCTCTGGTTGATTTCGAGAACGTGAACGACAGGTCGTTTGAGAGCGGCGGTGGTGGTGAAGAGGAATTATACGACGCGTGTTTCCATCAAGCCGGGAAGAAGAGGAGGCTGACGAGCGAGCAGGTTCAGTTCCTGGAGCGGAACTTCGAGGTGGAGAACAAGCTCGAGCCGGAGCGAAAAGCTCAGCTCGCGAAGGAGCTTGGGTTGCAGCCGAGACAAGTAGCCATTTGGTTCCAGAACCGACGAGCCAGGTTCAAGACCAAGCAGCTCGAGAAAGACTACAACGCCTTGAAAACTTGCTTCGACAAACTCAAAACTGACCACGACTCTCTTCTCCACCAAAACGACAAATTAAAACAACAGGTGAAATCGCTGAAGGAGAAGTTGATGGGGGTGGAGGAGAAAGAGAAGAGCGGTGGGGAGTCggaagtggtggtggtggcaatgAATAATTGCAAGCAGGAAGATGTGAATTCGGCCAAGAGTGATGTCTTTGATTCGGATAGTCCACCACCACACCATACCGCAGATTCATCCACCAAGTCGTTGGAGATGGAGACAGAGCAGTGCTCGGAGTTCTCACAACGGGAagtagaagaaggagaagaagaaaacctCATGATGACGACTCTGCCATGTCTGCCCAAGGTTGAAGAAGATGCTGCTTGTAACTTTGGGTTCCCAGATGAAGATCAAACCTTCTGTTTTTGGCCTTACTGA 852 0.4777 MAIPMSMASGPKVYASLLQNEPLTSPSHLLDSLWDPSFQGSSSKALVDFENVNDRSFESGGGGEEELYDACFHQAGKKRRLTSEQVQFLERNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYNALKTCFDKLKTDHDSLLHQNDKLKQQVKSLKEKLMGVEEKEKSGGESEVVVVAMNNCKQEDVNSAKSDVFDSDSPPPHHTADSSTKSLEMETEQCSEFSQREVEEGEEENLMMTTLPCLPKVEEDAACNFGFPDEDQTFCFWPY 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1003 283 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Sto11g1003 283 Coils Coil 145 179 - -
Sto11g1003 283 Pfam Homeobox associated leucine zipper 132 173 IPR003106 GO:0006355|GO:0043565
Sto11g1003 283 SUPERFAMILY Homeodomain-like 68 134 IPR009057 -
Sto11g1003 283 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Sto11g1003 283 MobiDBLite consensus disorder prediction 216 233 - -
Sto11g1003 283 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Sto11g1003 283 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Sto11g1003 283 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Sto11g1003 283 SMART HOX_1 75 136 IPR001356 GO:0003677
Sto11g1003 283 Gene3D - 71 139 - -
Sto11g1003 283 MobiDBLite consensus disorder prediction 202 249 - -
Sto11g1003 283 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 182 283 - -
Sto11g1003 283 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 15 181 - -
Sto11g1003 283 CDD homeodomain 77 133 IPR001356 GO:0003677
Sto11g1003 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 182 283 IPR045224 GO:0003700
Sto11g1003 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 181 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1003 Sto-Chr11 10365873 10366896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1003 35 214 Homeobox Transcription Factor Family AT3G01470 46.073 7.37e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto11g1003 Homeodomain 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1003 - K09338 adu:107489132 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1003 11 10365873 10366896 Sto11g1003 11 10365873 10366896 ECH