Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1000 ATGGAATCACAGTTGGGTCCGATAGACCAATCATTCAATAGCCGTTACTCCTGCCATGTCCGCGAGGCGCTCGATGAATTGCCTGACAATTTCATCATTACCGACCCTTCGCTTCCTGGCCATCCAATTGTTTTTGCGAGCCTTGGGTTCTTGAAAATGTCAGGGTATTCCAAACACGAGGTGATTGGCAAGAATGGTAGAATTTTTCAAGGACCAGGGACTTGTAGAAGATCGGTGATAGAAATTCGAGAGGCGATAAGAGAAGAGAGAGGCATTCAGATCAATTTGTTGAATTATCGTAAAGATGGAAGACCCTTTTGGATGTTGTTTCACATGAGCCCTGTATTTAACAAGCACGATGGTAGGGTGAGTCACTTCGTGGCAGTTCAGGTACCTATAACGAGGAAACGGAGGAGTTCGGGATGTGGGTTTGAGAGGAATGAGGTTAATTTGAGTGAAGATGGGTCTAAGGAGCAGGACTTTGTATACGGATCATGTAGGAAGGAAGTCTGCTTGGGTTCTTTATTGGAACTAGGTCGTGTTTTGTCCCTTCATCAAGTGTTGGAACATGATGTTAGAGAATCAGATAGTGAAGAGCCGTGTGAGGCTAGTGAGGTTGAGAAGAGAAAAGCTACAACTGCCATGGACAACATTTTTTCTGTGCTAACCCACTATAGCGAGTCAACTGGCAGATTGGTATGCAGAAAGAGATGCAGCATTTCTGGCGTGGGTCTTCTTAGCTCATCCTTGATAATATCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTGATCCACGCCTACCTGACATGCCAATTGTGTACGCCAGTGATGCCTTCTTGAAATTGACAGGTTATGTAAGAGATGAAGTGTTGGGGCGAAATTGTAGATTTTTAAGTGGATTGAATACTGACACCTCAACTTTATATTCGATAAGAGAAAGCATTAAATTTGAGCGACCATGCACAGTACGTATTTTGAATTACAGGAAGGATGAAAGCTCATTTTGGAATTTACTCCACATATCACCAGTTCGTGATGCTTCTGGCAAGATAGCATACTTTGTGGGTGTTCAAATAGAAGAAGGCTGTGTGAACAAGCATGAGGGACAAGGTTTGAGCCCTGATATGAGGCAGCTTGGCGTGGTTGGCGCAGTCAAGGTTGCTGTGAGGGGTTCATTGTTGATTGGTGGATCTTCAAAGTGA 1206 0.4362 MESQLGPIDQSFNSRYSCHVREALDELPDNFIITDPSLPGHPIVFASLGFLKMSGYSKHEVIGKNGRIFQGPGTCRRSVIEIREAIREERGIQINLLNYRKDGRPFWMLFHMSPVFNKHDGRVSHFVAVQVPITRKRRSSGCGFERNEVNLSEDGSKEQDFVYGSCRKEVCLGSLLELGRVLSLHQVLEHDVRESDSEEPCEASEVEKRKATTAMDNIFSVLTHYSESTGRLVCRKRCSISGVGLLSSSLIISLGRIKQSFVLTDPRLPDMPIVYASDAFLKLTGYVRDEVLGRNCRFLSGLNTDTSTLYSIRESIKFERPCTVRILNYRKDESSFWNLLHISPVRDASGKIAYFVGVQIEEGCVNKHEGQGLSPDMRQLGVVGAVKVAVRGSLLIGGSSK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1000 401 Gene3D PAS domain 260 383 - -
Sto11g1000 401 SMART pas_2 18 87 IPR000014 -
Sto11g1000 401 SMART pas_2 248 321 IPR000014 -
Sto11g1000 401 SUPERFAMILY PYP-like sensor domain (PAS domain) 261 359 IPR035965 -
Sto11g1000 401 ProSiteProfiles PAC domain profile. 90 145 IPR000700 -
Sto11g1000 401 Gene3D PAS domain 18 150 - -
Sto11g1000 401 ProSiteProfiles PAS repeat profile. 273 295 IPR000014 -
Sto11g1000 401 TIGRFAM sensory_box: PAS domain S-box protein 273 358 IPR000014 -
Sto11g1000 401 TIGRFAM sensory_box: PAS domain S-box protein 21 137 IPR000014 -
Sto11g1000 401 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Sto11g1000 401 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 130 IPR035965 -
Sto11g1000 401 PANTHER PROTEIN TWIN LOV 1 15 137 - -
Sto11g1000 401 PANTHER PROTEIN TWIN LOV 1 8 44 - -
Sto11g1000 401 PANTHER PROTEIN TWIN LOV 1 141 392 - -
Sto11g1000 401 CDD PAS 269 358 IPR000014 -
Sto11g1000 401 SMART pac_2 93 136 IPR001610 -
Sto11g1000 401 SMART pac_2 323 362 IPR001610 -
Sto11g1000 401 Pfam PAS domain 269 359 IPR000014 -
Sto11g1000 401 Pfam PAS domain 30 134 IPR000014 -
Sto11g1000 401 CDD PAS 27 133 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1000 Sto-Chr11 10323926 10327590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1000 15 361 AGC Kinase Gene Family AT5G58140 34.026 6.06e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1000 - - pper:18791378 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1000 11 10323926 10327590 Sto11g1000 11 10323926 10327590 ECH