Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0994 ttggtAGCCATTCCTACCCTATATGCCAATGTGTTAGAGCAAGAAGATTATTGGAAACAACGTTCCTCTGAATTTGATGCGTATTGGcaagaaaaagcaaaagaagCTGAGAAGGCCAACCTTGCAGCTTATGATGATAAGCCCTATGAAGTTGTGGGCAACCTCTCTGAAAGTGTTGAACGAATCCTGCTTGGAAAACAAGATGGGCGAAGGCTGCTGAAGGGGAAATCAAAGCTTAATGGTCCATGCGAGGCCACCAACCCCATTGACGCTTGCTGGAGGTGCGATCCCAATTGGGCTAACTACCGCCAGAAGTTGGCGGATTGCGTGCAAGGTTTTGGAAGAAAAACAGTTGGTGGAAAGGGTGGTCCATACTATGTGGTCACAGATCCCTCAGATAGTGATCTGGTTAACCCCAAAGTAGGTACCCTACGCCATGCAGTTACAAGAACTGGGCCTTTATGGATCATCTTTGCACGCAGCATGGTGATTAGGCTCACCCAGGAGCTCATAGTTGCGAGCCACAAGACCATTGATGGCAGAGGAGCAACTGGATTAATCCAAAGGATGCCTAGGTGCAGGTGGGGTTTTGTGCATGTGGTTAACAATGACTACACCCATTGGATCATGTATGCCATTGGTGGCAGCAAGAGTCCTACCATCATCAGTGAGGGTAACAGATTCATTGCTCCAGATAACATCCATGCCAAAGAGGTGACCAAGAGAGAATACTCACCAGAGGGGGTATGGAAGAATTGGCAATGGAGATCAATAAACGACCTATTCATGAACGGAGCATACTTCAGGGAATCTGGGATTCAGCTTCCAGTATCAACGCGTGATATGCTCAAAGGCAAGCCTGGAACAGATGTGTCAAGACTCACACGCTATGCTGGAAATCTTAAATGCATAGTTGGTCGTCCTTGTTAG 930 0.4624 LVAIPTLYANVLEQEDYWKQRSSEFDAYWQEKAKEAEKANLAAYDDKPYEVVGNLSESVERILLGKQDGRRLLKGKSKLNGPCEATNPIDACWRCDPNWANYRQKLADCVQGFGRKTVGGKGGPYYVVTDPSDSDLVNPKVGTLRHAVTRTGPLWIIFARSMVIRLTQELIVASHKTIDGRGATGLIQRMPRCRWGFVHVVNNDYTHWIMYAIGGSKSPTIISEGNRFIAPDNIHAKEVTKREYSPEGVWKNWQWRSINDLFMNGAYFRESGIQLPVSTRDMLKGKPGTDVSRLTRYAGNLKCIVGRPC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0994 309 PANTHER PECTATE LYASE 186 309 - -
Sto11g0994 309 SMART amb_all 99 234 IPR002022 -
Sto11g0994 309 PANTHER PECTATE LYASE 3 183 - -
Sto11g0994 309 PANTHER PECTATE LYASE 18-RELATED 186 309 IPR045032 GO:0030570
Sto11g0994 309 SUPERFAMILY Pectin lyase-like 87 187 IPR011050 -
Sto11g0994 309 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Sto11g0994 309 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Sto11g0994 309 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Sto11g0994 309 SUPERFAMILY Pectin lyase-like 185 309 IPR011050 -
Sto11g0994 309 PANTHER PECTATE LYASE 18-RELATED 3 183 IPR045032 GO:0030570
Sto11g0994 309 Gene3D - 86 185 IPR012334 -
Sto11g0994 309 Gene3D - 186 302 IPR012334 -
Sto11g0994 309 Pfam Pectate lyase, N terminus 23 72 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0994 Sto-Chr11 10273930 10275889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0994 186 309 Polysaccharide Lyase AT1G14420 56.818 9.86e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0994 K01728 - gmx:100798579 243.047