Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0993 ATGGAGCTTAACTCTGTGAAATCTGAACTAATTCCAACAAGTTTTGAGAATAATGCTAGTAGGTGTGGcaaaaggaagagaagagatTCCTCCATCGCCATATTAGAGGGTAATGAGCATCTACAAGGCGATCAATCAATCGCGGCCGTGCCTGcagccaccaccaccaccacaaccGTGAAAAGAAGCTCAAGGTTTCGAGGAGTTAGCAGGTATGAAGCCCATCTATGGGATAAAGGGACATGGAATCCAActcagaagaagaaaggaaagcaAGGTGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAATTACAACCTTCACAAACTTCCCTGTATCTGATTATGAGACAGAGATTGAAATAATGAAATCTGTAACCAAAGAAGAATACCTTGCTTCATTGAGAAGGAGAAGCAGTGGATTTTCTAGAGGTGTATCAAAGTATAGAGGAGTGGCTAGGCACCATCACAATGGAAGATGGGAAGCAAGGATAGGGAGAGTGTTTGGCAACAAGTACCTCTACCTTGGGACTTATAGTACTCAAGAAGAGGCTGCTCGTGCATATGACATAGCAGCAATTGAGTACAGAGGCATAAATGCAGTGACAAACTTTGACATGAGCACATACATCAGATGGCTAAGACCAGGAGCACCTTCTACTTCTTTACTAGATGAAAAATTACCAAGTAGTACAGATCCTCCTCACAACATGACAACCTTAAACCTCGTACAAACCAGAGGAATCACTGAGGTATCCAACTTCAACCTCCATCCAATTCCAGCATGTGACTCACACAGTACCAAGAAGAAGCAAGGCACTTCACAACTATACATGGGTCCTCTAAGTGCTtgcaataataacaataataataataagtcatCTTCTTCCCCAACAGCTCTAGGGCTTCTCCTGAAATCCTCAGTGTTCAGAGAGCTGATGCAGAGGAATCTGAATTCTGGTATAACTGAAGAAGCTGAAGAAAGTGAATTGAGAAGCAATAATAATGATGGGGTTGGAGGGGTTTTTGATAATGAAATTGCCAGTAcatcttacttgtgctcttccaATAGTACCAAGTTTTGCATGGAGCCACCAGAAGAAAGCACAATGCCACTGTATCATAGAACAGTGCCATCATTATGGAATTAA 1182 0.3832 MELNSVKSELIPTSFENNASRCGKRKRRDSSIAILEGNEHLQGDQSIAAVPAATTTTTTVKRSSRFRGVSRYEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGITTFTNFPVSDYETEIEIMKSVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDMSTYIRWLRPGAPSTSLLDEKLPSSTDPPHNMTTLNLVQTRGITEVSNFNLHPIPACDSHSTKKKQGTSQLYMGPLSACNNNNNNNKSSSSPTALGLLLKSSVFRELMQRNLNSGITEEAEESELRSNNNDGVGGVFDNEIASTSYLCSSNSTKFCMEPPEESTMPLYHRTVPSLWN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0993 393 Gene3D AP2/ERF domain 64 124 IPR036955 GO:0003700|GO:0006355
Sto11g0993 393 Gene3D AP2/ERF domain 157 218 IPR036955 GO:0003700|GO:0006355
Sto11g0993 393 CDD AP2 157 218 IPR001471 GO:0003700|GO:0006355
Sto11g0993 393 ProSiteProfiles AP2/ERF domain profile. 158 216 IPR001471 GO:0003700|GO:0006355
Sto11g0993 393 SUPERFAMILY DNA-binding domain 157 218 IPR016177 GO:0003677
Sto11g0993 393 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 389 - -
Sto11g0993 393 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Sto11g0993 393 Pfam AP2 domain 157 208 IPR001471 GO:0003700|GO:0006355
Sto11g0993 393 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 389 - -
Sto11g0993 393 SUPERFAMILY DNA-binding domain 64 124 IPR016177 GO:0003677
Sto11g0993 393 SMART rav1_2 158 222 IPR001471 GO:0003700|GO:0006355
Sto11g0993 393 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0993 Sto-Chr11 10266928 10269679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0993 40 220 AP2-EREBP Transcription Factor Family AT5G57390 60.309 8.06e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto11g0993 AP2 8.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0993 - - gmx:100799621 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0993 11 10266928 10269679 Sto11g0993 11 10266928 10269679 ECH