LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto11g0991	ATGAGTTTCTTACCCACCCTCGCTTGTTCTTCCGTTAGCGACGAATCTTTCTCGTTGCCAAAACCTACCCAGTTGGGATATAATCCGCCGGAGGAGCTCTTCGGTCTGGAGGTGGAACTCAAGCCGAGGAAAGATGGTTCTCCAACATCAGAGCCTAGATCGTGGTTTGGTCCAACTGGACAGTATATCAGAGAGTTGCCTTGTCCAAGTTGCCGGGGAAGGGGTTATACTCCTTGCACCGAGTGTGGAATTGGAAGATCAAGATCAGACTGTCCAAAGTGTAGTGGGAAGGGTATAGTTACTTGCCACCAGTGCTCGGGAGACCGTGTTACTTGGGAAGAAGCAATTGATGAACAACCATGGGAAAGAGCTCGTTCTAGTTCCCCTCTCAAAGTGCAGGAAGATGATGAAGTTGACAATTTAGACATAAAGCTGGATGTGAAGAAAAAATCAAAGCGTGTTTACCAGTCACCATCTCCTGAAGTTGGATTAAAGATTAGTCGCTCATTAAAAAGTCTCAATGCAAAAACTGGTCTGTTTAGTAAGAGAATGAAGATTATTCATCGTGATCCCAAGCTTCATGCTCAGAGAGTGGCAGCTATTAAGAAAACCAGGGGAACTCCTGCAGCAAGAAAGCATACCTCTAACACTATGAAAGCATTCTTTAGTGATCCAGAAAATCGTCAGAAAAGGAGCATTGCCATGAAAGGAGTGAATTTCTTCTGCCAAAATTGTGGGCGTGAAGGGCATAGAAGACATTACTGTCCAGAACTCAATGATAGTTCGATGGGCAGGCAATTCACGTGTGGGCTATGTGGGGAAAAAGGCCATAACAGAAGAACATGCAGCAAGTTAAAGACAATCCTTCGTGAAGGGAGACTTATAAAGCACTATCGTTGTAAAATATGTCGCCAGTATGGCCATAATCGCAGGACATGCCCTCAAGTAGTTGGTATCGACAAAAGAAGGGACTTGGGTCCTCCAAGACCATACAAGTGTCGGTTGTGCCACAAAAAAGGGCACAATGTTAGGACATGTCCTAGGAGGAGTGTTATTACTCAACATCCTGAAGATTAA	1077	0.4475	MSFLPTLACSSVSDESFSLPKPTQLGYNPPEELFGLEVELKPRKDGSPTSEPRSWFGPTGQYIRELPCPSCRGRGYTPCTECGIGRSRSDCPKCSGKGIVTCHQCSGDRVTWEEAIDEQPWERARSSSPLKVQEDDEVDNLDIKLDVKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPKLHAQRVAAIKKTRGTPAARKHTSNTMKAFFSDPENRQKRSIAMKGVNFFCQNCGREGHRRHYCPELNDSSMGRQFTCGLCGEKGHNRRTCSKLKTILREGRLIKHYRCKICRQYGHNRRTCPQVVGIDKRRDLGPPRPYKCRLCHKKGHNVRTCPRRSVITQHPED	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto11g0991	358	ProSiteProfiles	Zinc finger CCHC-type profile.	242	257	IPR001878	GO:0003676\|GO:0008270
	Sto11g0991	358	SMART	c2hcfinal6	299	315	IPR001878	GO:0003676\|GO:0008270
	Sto11g0991	358	SMART	c2hcfinal6	241	257	IPR001878	GO:0003676\|GO:0008270
	Sto11g0991	358	SMART	c2hcfinal6	332	348	IPR001878	GO:0003676\|GO:0008270
	Sto11g0991	358	SMART	c2hcfinal6	268	284	IPR001878	GO:0003676\|GO:0008270
	Sto11g0991	358	Gene3D	-	241	289	-	-
	Sto11g0991	358	Pfam	Zinc knuckle	328	347	IPR025829	-
	Sto11g0991	358	PANTHER	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	20	351	-	-
	Sto11g0991	358	SUPERFAMILY	Retrovirus zinc finger-like domains	294	349	IPR036875	GO:0003676\|GO:0008270
	Sto11g0991	358	SUPERFAMILY	Retrovirus zinc finger-like domains	239	284	IPR036875	GO:0003676\|GO:0008270
	Sto11g0991	358	Gene3D	-	295	355	-	-
	Sto11g0991	358	PANTHER	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	20	351	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto11g0991	24	351	C2H2 Transcription Factor Family	AT5G20220	64.478	8.20e-155	439

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto11g0991	-		-	gmx:100800156	593.193

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto11g0991	11	10253982	10258472	Sto11g0991	11	10253982	10258472	ECH