Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0990 ATGCTGCAGCTACActttctatcttcttcttcctcactccCTACACACTACTCCATTCAGCTCTGCCCTAATCACAGTTTCTCTCCAAAATCCTTTTCTTTTACTCGCTCTTCCAACCCCAGTGGCTCAACCTTCTCCCTTACCCCACCATCCTCCCGCAGAAACTCACTCTCTGTCAAATGCCGTCAATCCGAGTACTACGACCAGCAAAGCTTGGTCAAACCCTCAAGAAATCCAAACGGAAGTGGTGTGGTTGGAGCTTTGCCACCTAGGGTTTATGTGGGTCACTCCATTTACAAAGGGAAGGCTGCACTTACGGTGACTCCTAGGCCTCCAGAGTTTGCTCCATTGGATTCAGGTGCTTTCAAAGTATCTCGGGAAGGGTATGTGCTGCTTCAGTTTGCTCCTGCTGTCAGTATGCGCCAATATGACTGGAACAGAAAGCAGGTATTCTCTTTATCAGTGGGTGAAATGGGAAATATAATTAGCCTTGGTCCAAAGGAGTCTTGTGAATTCTTTCATGATCCTTTTAAAGGGAAAGGTGATGAAGGTAAAATCAGAAAAGTTTTGAAGGTGGAGCCACTTCCAGATGGTTCTGGTCACTTTTTTAACCTAAGTGTTCAAAACAAGATTGAGAACGTGGATGAAAACATCTATATCCCTGTTACAAAAGCAgaattatcagttttcacctcaATTTTCAGTTTTATCATGCCGTACCTTCTAGGTTGGCATGCATTTGCAAACACCATAAAGCCAGAGGAAAGCCGAATGAATAACGCCAATCCAAGATATGGAGGGGACTATGAATGGAGCAGATAG 822 0.4209 MLQLHFLSSSSSLPTHYSIQLCPNHSFSPKSFSFTRSSNPSGSTFSLTPPSSRRNSLSVKCRQSEYYDQQSLVKPSRNPNGSGVVGALPPRVYVGHSIYKGKAALTVTPRPPEFAPLDSGAFKVSREGYVLLQFAPAVSMRQYDWNRKQVFSLSVGEMGNIISLGPKESCEFFHDPFKGKGDEGKIRKVLKVEPLPDGSGHFFNLSVQNKIENVDENIYIPVTKAELSVFTSIFSFIMPYLLGWHAFANTIKPEESRMNNANPRYGGDYEWSR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0990 273 Gene3D Transcriptional Coactivator Pc4; Chain A 85 262 IPR009044 GO:0003677|GO:0006355
Sto11g0990 273 Pfam Whirly transcription factor 98 232 IPR013742 GO:0003697|GO:0006355|GO:0006952
Sto11g0990 273 SUPERFAMILY ssDNA-binding transcriptional regulator domain 90 273 IPR009044 GO:0003677|GO:0006355
Sto11g0990 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 18 273 IPR013742 GO:0003697|GO:0006355|GO:0006952
Sto11g0990 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 18 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0990 Sto-Chr11 10249901 10252763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0990 45 273 Whirly Transcription Factor Family AT1G14410 66.957 5.41e-117 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Sto11g0990 Whirly 2.7e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0990 - - gmx:100789252 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0990 11 10249901 10252763 Sto11g0990 11 10249901 10252763 ECH