Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0976 ATGTCAAGCAGAAGTAGATCATCTCGTTCCAGACAATCGAGTGGCAACAACATGAGTGATGCTCAGATCTCTGATCTCATCTCCAAATTACAACGCCTTCTTCCTGAGCTTCGAACTAAACCCTCCCACAAGGTTTCAGGGGCTAAGGTGTTGCAGGAGACATGCAACTACATAAAGAGTCTGCACAGAGAAGTTGATGATCTGAGTGATCGATTGTCTCAGCTTTTGGCCACCACTGACTCCAATACTCCTCAAGCTGCCATTATTAGGAGTTTGCTTAtgtaa 285 0.4456 MSSRSRSSRSRQSSGNNMSDAQISDLISKLQRLLPELRTKPSHKVSGAKVLQETCNYIKSLHREVDDLSDRLSQLLATTDSNTPQAAIIRSLLM 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0976 94 Gene3D - 20 89 IPR036638 GO:0046983
Sto11g0976 94 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 61 IPR011598 GO:0046983
Sto11g0976 94 CDD bHLH_AtPRE_like 19 78 - -
Sto11g0976 94 PANTHER TRANSCRIPTION FACTOR PRE 5 94 IPR044293 GO:0006355|GO:0040008|GO:0046983
Sto11g0976 94 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 22 85 IPR036638 GO:0046983
Sto11g0976 94 Coils Coil 58 78 - -
Sto11g0976 94 PANTHER TRANSCRIPTION FACTOR PRE3 5 94 - -
Sto11g0976 94 MobiDBLite consensus disorder prediction 1 22 - -
Sto11g0976 94 Pfam Helix-loop-helix DNA-binding domain 22 62 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0976 Sto-Chr11 10135204 10135574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0976 5 94 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 61.538 6.49e-31 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto11g0976 HLH 4.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0976 - - psom:113319626 130.568
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0976 11 10135204 10135574 Sto11g0976 11 10135204 10135574 ECH
Sto11g0976 11 10135204 10135574 Sto3g1524 3 11264336 11266149 ECH
Sto11g0976 11 10135204 10135574 Sto8g1978 8 12792304 12793444 ECH