Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0972 TTGGGGGAGGAGTCAGGCGGTAGGCTTGGGCATGGTGTAGAAGTGGATGTTTCCCACCCTAAGCTCATTGATACTCTTAGTGGCATGAATATTGAATTAGTAGCATGTGGGGAATATCATACTTGTGCTGTTACATTTTCTGGGGATCTTTATACCTGGGGTGATGGCACTCACAATTCTGGTTTGCTTGGGCATGGAAATGAAGTCAGTCATTGGATTCCTAAGAGGGTAAGTGGTAACATGGAGGGTGTACAGGTATCCTATGTGTCTTGTGGACCTTGGCATACTGCAATTGTGACATCTTCTGGCCAGTTGTTCACATTTGGGGATGGATCTTTTGGTGCCCTTGGTCAAGGAGATCATAGTAGCACAAATATTCCTCGGGAAGTAGAAACTTTGAAAGGGTTGAGAACAACCAGGGTTTCCTGTGGTGTTTGGCACACTGCTGCTGTTGCTGTTGCTGTTGCTGAGGTGGAAACCAATTCTATGGAATCTTCTATGCACTCTCCCAGTGGAAAACTGTTCACCTGGGGTGATGGAGATAAAGGCCAACTTGGACATGGTGATAACGAACCTAGACTTGTTCCTGAGTGTGTAATTGCATTGgataatgaaaatatttgtCAAGTCGCTTGTGGTCACAATCTTACCATTGCTTTGACAACCTCTGGACATGTATATACAATGGGCAGTACTGCCTATGGGCAACTTGGAAGTCCTGCCGCTGATGGAAAAGTCCCTACACAGGTTGAAGGTAAAATTACTGGCAATTTTATAGAAAATATTGCCTGTGGTTCATACCATGTTGCAGTCTTAACTTCTAAGGCAGAGGTTTACACCTGGGGAAAGGGTTTGAATGGGCAGCTAGGCCATGGAGACAATGATAACCGGATACACCTACGCTATGCTGACCAATCTGTGTGTTCTGGTTGCAACAACCCTTTTGGATTCAGAAGGAAACGTCACaattgttacaactgtggactTGTTTTTTGCAAAGCATGCACCAGTAGAAAATCTGTTAAAGCTTCCCTTGCTCCAAATTCCAACAAGCCATATCGTGTTTGTGATGACTGTTTTTCTAAACTTAAGAAAACCACTGAATCTGTTTCCTTGCTCGGAGGATTCACTTCTCCAAACGCATCAAATTCTCTTGCTGGAGCATTAAAGAAACCCCATTCAGTTTCTTTGCCTGCTAGTAGTATGAACTCTGAAGCATCATCTCCAGTCTCAGAAAAGTCAAGTTCACGACAGTCTTGTGAAGATGTCCATGATGATACAAAGGTCAAAAACGACATTTCAAGCCAAGAAGTTATAAGTTTGAGGGCACAGGTTGAAGATCTTACTCGTAAATCCAAGGATCTTGAGGCTGAACTCGAGAGGACGACAAAGCAATTGAAGGAAGTGACTGCAGTAGCTGCAGAAGAAGCAGAGAAGTGTAAATCTGCCAAAGAGGTTATAAGGAAATGGTGCAAAGAGTGCCAGAAGGAGACAATGCGAACTCCCAGTGCCGACTTCTCTGCTGAAATTACTACTAATAATCCGTCCTTAGATGAGAGTCATAAAACAAACCCTACTATTCCTGACACTTTGTCCAACAGCAATGCTGCAGATCAGATGTTGCCTAACGTTTCCAAAGCCCAAAGTGGAAAGTCAGAGTGGGTGGTGCAAGATGAACCAGGTGTGTACGTGAGTTTGTCCTCCTCGCCAGGTGGTGGTACCGAACTTAAACGTGTTCGCTTCAGTCGGAGACACTTTACTGAACAAGAAGCTGAAAAGTGGTGGGCTGAAAATGGAACCAAAGTATTGGAGCGGAACAATGTAGTTGTTGAAATCTTTGATATCCCATTAACTCCGATTCGATCCAATGTAGATGGAAAAACGTTCAAGAAGCCTCGGCGTCCCTACGAGAAGGAGCGTTTGGACCACGAGCTGAGGCTTGTTGGGGAGTACGGGCTTCGCTGCAAGAGGGAGCTCTGGAGGGTGCAGTATGCGCTCAGCCGGATTCGAAACGCGGCTAGAATGCTTCTCACGCTCGACGACAAGAATCCTCGTCGTATCTTCGAGGGCGAAGCTCTTCTGAGGAGGATGAACAGGTACGGTCTCCTCGACGAGAGCCAGAATAAACTCGATTACGTCTTGGCTCTCACCGTCGAGAACTTCCTCGAGCGCCGACTCCAGACGCTTGTCTTCAAGTCCGGCATGGCTAAGTCCATCCACCACGCCAGAGTGTTGATCAGGCAGAGGCACATTAGGGTAGGAAGGCAAGTGGTGAATATTCCATCATTTATGGTGAGGATGGACTCACAGAAACACATTGATTTCTCACTAACAAGTCCGTTGGGTGGTGGACGGCCTGGAAGAGTGAAGCGAAGGAACCAGAGGGCAGCTGCTAAGAAGGCTGCTGGGGGAGATGgagatgaggaagatgaagagTGA 2439 0.4547 LGEESGGRLGHGVEVDVSHPKLIDTLSGMNIELVACGEYHTCAVTFSGDLYTWGDGTHNSGLLGHGNEVSHWIPKRVSGNMEGVQVSYVSCGPWHTAIVTSSGQLFTFGDGSFGALGQGDHSSTNIPREVETLKGLRTTRVSCGVWHTAAVAVAVAEVETNSMESSMHSPSGKLFTWGDGDKGQLGHGDNEPRLVPECVIALDNENICQVACGHNLTIALTTSGHVYTMGSTAYGQLGSPAADGKVPTQVEGKITGNFIENIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDNRIHLRYADQSVCSGCNNPFGFRRKRHNCYNCGLVFCKACTSRKSVKASLAPNSNKPYRVCDDCFSKLKKTTESVSLLGGFTSPNASNSLAGALKKPHSVSLPASSMNSEASSPVSEKSSSRQSCEDVHDDTKVKNDISSQEVISLRAQVEDLTRKSKDLEAELERTTKQLKEVTAVAAEEAEKCKSAKEVIRKWCKECQKETMRTPSADFSAEITTNNPSLDESHKTNPTIPDTLSNSNAADQMLPNVSKAQSGKSEWVVQDEPGVYVSLSSSPGGGTELKRVRFSRRHFTEQEAEKWWAENGTKVLERNNVVVEIFDIPLTPIRSNVDGKTFKKPRRPYEKERLDHELRLVGEYGLRCKRELWRVQYALSRIRNAARMLLTLDDKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRMDSQKHIDFSLTSPLGGGRPGRVKRRNQRAAAKKAAGGDGDEEDEE 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0972 812 Pfam S4 domain 724 766 IPR002942 GO:0003723
Sto11g0972 812 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 48 102 IPR000408 -
Sto11g0972 812 CDD FYVE_like_SF 308 360 - -
Sto11g0972 812 MobiDBLite consensus disorder prediction 394 427 - -
Sto11g0972 812 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 303 371 - -
Sto11g0972 812 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 2 298 - -
Sto11g0972 812 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 224 275 IPR000408 -
Sto11g0972 812 MobiDBLite consensus disorder prediction 776 812 - -
Sto11g0972 812 MobiDBLite consensus disorder prediction 396 416 - -
Sto11g0972 812 MobiDBLite consensus disorder prediction 505 536 - -
Sto11g0972 812 Pfam Transcription factor regulating root and shoot growth via Pin3 551 604 IPR013591 -
Sto11g0972 812 PRINTS Chromosome condensation regulator RCC1 signature 226 240 IPR000408 -
Sto11g0972 812 PRINTS Chromosome condensation regulator RCC1 signature 49 65 IPR000408 -
Sto11g0972 812 PRINTS Chromosome condensation regulator RCC1 signature 86 99 IPR000408 -
Sto11g0972 812 PRINTS Chromosome condensation regulator RCC1 signature 105 121 IPR000408 -
Sto11g0972 812 PRINTS Chromosome condensation regulator RCC1 signature 172 188 IPR000408 -
Sto11g0972 812 PRINTS Chromosome condensation regulator RCC1 signature 210 226 IPR000408 -
Sto11g0972 812 Pfam Ribosomal protein S4/S9 N-terminal domain 626 723 IPR001912 GO:0019843
Sto11g0972 812 SUPERFAMILY RCC1/BLIP-II 2 302 IPR009091 -
Sto11g0972 812 Gene3D - 723 779 IPR036986 GO:0003723
Sto11g0972 812 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 103 154 IPR000408 -
Sto11g0972 812 Coils Coil 438 479 - -
Sto11g0972 812 ProSiteProfiles S4 RNA-binding domain profile. 724 798 - -
Sto11g0972 812 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 374 605 - -
Sto11g0972 812 SMART s4_6 724 795 IPR002942 GO:0003723
Sto11g0972 812 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 302 364 IPR017455 -
Sto11g0972 812 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 374 605 - -
Sto11g0972 812 TIGRFAM uS4_arch: ribosomal protein uS4 627 781 IPR005710 GO:0003735|GO:0006412|GO:0015935
Sto11g0972 812 Gene3D - 155 310 IPR009091 -
Sto11g0972 812 Pfam FYVE zinc finger 304 364 IPR000306 GO:0046872
Sto11g0972 812 CDD S4 724 766 - -
Sto11g0972 812 Pfam Regulator of chromosome condensation (RCC1) repeat 223 272 IPR000408 -
Sto11g0972 812 Pfam Regulator of chromosome condensation (RCC1) repeat 47 98 IPR000408 -
Sto11g0972 812 Pfam Regulator of chromosome condensation (RCC1) repeat 2 44 IPR000408 -
Sto11g0972 812 Pfam Regulator of chromosome condensation (RCC1) repeat 171 220 IPR000408 -
Sto11g0972 812 Pfam Regulator of chromosome condensation (RCC1) repeat 102 151 IPR000408 -
Sto11g0972 812 ProSitePatterns Ribosomal protein S4 signature. 722 746 IPR018079 GO:0019843
Sto11g0972 812 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 1 47 IPR000408 -
Sto11g0972 812 SMART fyve_4 297 365 IPR000306 GO:0046872
Sto11g0972 812 SUPERFAMILY Alpha-L RNA-binding motif 627 768 - -
Sto11g0972 812 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 303 371 - -
Sto11g0972 812 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 2 298 - -
Sto11g0972 812 Gene3D - 1 154 IPR009091 -
Sto11g0972 812 SMART Ribosomal_S4_2 623 723 IPR001912 GO:0019843
Sto11g0972 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 371 IPR013083 -
Sto11g0972 812 SUPERFAMILY FYVE/PHD zinc finger 302 370 IPR011011 -
Sto11g0972 812 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 172 223 IPR000408 -
Sto11g0972 812 ProSiteProfiles BRX domain profile. 552 607 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0972 Sto-Chr11 10079201 10086394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0972 626 802 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 91.525 3.91e-114 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0972 - - cmax:111471347 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0972 11 10079201 10086394 Sto11g0972 11 10079201 10086394 ECH