LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto11g0952	ATGTGTCATCCATTCTCCATTATTGAGTGGAGTGTGAATGTGCATGGACTTGAGCCATTTGGTTTGGAAGTGATATGCTCAGCGGAGTGTGGATGTGGATTCAATTCAGAGCTTCCCAGTTTGGGGGTTGAcaagtttaataaaaatattcctTTTTCTGTTGCATCTGCTCTCTCTTACGCTACTggAAGTGATAAAATTGAAGCCATCACGCTACGCTTGCCCAAAACTAAAGAAGTTTGTTGGAATGGAAgtgagatgaagaagatgaaaaacctAAAAATGCTTGTCATTGAAGGTGCTCACTTTTCTAAAGGGCCTGATCATCTCCCAAGAAGTTTGAGAGTGCTAGAATGGAGGGGATATTCTTCACCAACTTTACCGCCAAGTTTTGACCCACGGAAACTTGTCGGATTGAACTTGTCTAGGAGTTGCTTTAGGATGAATGAACGGCTCATGAAATTCGAATCTTTGATTACATTGAATTTAGGACGTtgtaattttttgaaagaagtTCCAGACTTATCTGGAGCCTCAAATTTAGTGTCTTTGTATCTTAATGGTTGCAAGAATTTGGTTGAGGTTCATGATTCCATCGGGTTCCTTGATAAACTTGAACGTTTGGCTGCTAACGGATGTACCAAACTTCAGATTCTTCCTTGCAGTATCAAATCAACCTCTCTTCAACGTCTGTTCCTTGAAGGGTGCAGGAGTCTGAGAAGTTTTCCTGAAATTCTAGGAAAGATGAAACATCTAAGAGATCTTAGTTTGTTGGGGTTTTCTATAAATGAATTTCCATTTTCGTTTAGAAACCTTGTTGGACTCAAGTCCATAAGGCTGTATAACTTTAAGATGCTTCATCGAGTAATGACTAGTATTTTTACGTTGCCGAGACTTGAGACATTACTGGCTATAAATTGTGGATGCGATCTAAATTTGATCTTGGGCAATGGTGGAGAACAAGAAAGAGTGAACTTATCAGTGTCTCCAAGCATTAGACTTGTTATATTTGAGGGATGCACTTTTCCAGACTATTTTCTCACTAAAGTATTGTCCTGCTTACCTAAGTTGAAGTCTTTATTCCTACGTTGTAGTACTTTCACAATCCTTCCTGCATGCATTAGTGATTGCCGCTTTTTGAGGAGTCTTGTTTTGGATGACTGCTCTTGTCTTCGAGAAATTAAGGGGATTCCACCAAACATAAAGTATCTCTCTGCATCAAACTGCACATCCTTGACTTGTCAATCTCAAAGCATATTATTGAGTCAGGCATTACATAAAGGTGGGGGCAAAGATTTTTGTTTGCCAGGATTAAGGATACCAAAATGGTTTGACCACAGTAGCAGGGGACCAACCCTGTCTTTCTGGTTCCGCAACAAATTCCCTTCTATGGCTCTCTGTGTTGTTGGAGTATTGGATAAGTCGGGTAGATTTCCTACCTCCAGATTCAACATGCTCATAAATGGCATTCAACAGTTCCATTTTCATCTGAGAGCAGATAAAATGTTTCAGGCTGAACATATAAATCTATTGGATCTGCAACTCAAATTTTACAAAGGCGAGATCGGAAAAATATACGTAGAGGATGGATGGAACCATGTTGAGCTTTCGTACAGACAACCTTGTAAAGGGGATTTTCCACAAACATGCACATTGAAGAAAGGAAGTATAAAATGGATGGGAGTTTATGTATACAAGCAAAAAACTAGCATGAACAATATCCGGTTCTCAAATCCTAAGCTTCCAGAGACAACATATGGTGATTTCTTGAACGGCAATAAGGGTTTGGACCTACACTGCTATCCATTGCAGAAAAAAAGGCAAGACATGGAAGCTTGTGAGGAACCTGATACACAACAGTGGCAAGTTCAAAGAGGTGGTAGTGAATGTGTATCAGTATCACAGAATTTATGGAGGGACATTAGCGGCATAGAATCTCCTCCAAGAATCAAAATCCTAATGTGGAATATCTGTCAAGATGCTCTGCCAACTTATGAGTATCTGTTCAGAAGGAAGCTAGTAGATAGTCCACTCTGTCCTATTTGTGGAAGGGAAGCTGAAACAATAGAGCATATGTTCCTGAAATGTGCATGGACTCAACCCATTTGGTTTGGAAGTGATGTTCAGTGGAGTGTGGACATGGATTCGATGCACAGTTTTCCAGTTTGGTTTTGCCAGAAACTTGAGGAAATAAAAAGGGTACATCCTAATGCTAAACAAATCTCTGCTTTAGTGGTTTCTATATGTTGGGCTATTTGGAAGGGAAGGAATGAATTTGTTCTTGAGGACAAACCTGTTAATCCTATGAGTGCATTAATCAATCTGAGCTGA	2331	0.3887	MCHPFSIIEWSVNVHGLEPFGLEVICSAECGCGFNSELPSLGVDKFNKNIPFSVASALSYATGSDKIEAITLRLPKTKEVCWNGSEMKKMKNLKMLVIEGAHFSKGPDHLPRSLRVLEWRGYSSPTLPPSFDPRKLVGLNLSRSCFRMNERLMKFESLITLNLGRCNFLKEVPDLSGASNLVSLYLNGCKNLVEVHDSIGFLDKLERLAANGCTKLQILPCSIKSTSLQRLFLEGCRSLRSFPEILGKMKHLRDLSLLGFSINEFPFSFRNLVGLKSIRLYNFKMLHRVMTSIFTLPRLETLLAINCGCDLNLILGNGGEQERVNLSVSPSIRLVIFEGCTFPDYFLTKVLSCLPKLKSLFLRCSTFTILPACISDCRFLRSLVLDDCSCLREIKGIPPNIKYLSASNCTSLTCQSQSILLSQALHKGGGKDFCLPGLRIPKWFDHSSRGPTLSFWFRNKFPSMALCVVGVLDKSGRFPTSRFNMLINGIQQFHFHLRADKMFQAEHINLLDLQLKFYKGEIGKIYVEDGWNHVELSYRQPCKGDFPQTCTLKKGSIKWMGVYVYKQKTSMNNIRFSNPKLPETTYGDFLNGNKGLDLHCYPLQKKRQDMEACEEPDTQQWQVQRGGSECVSVSQNLWRDISGIESPPRIKILMWNICQDALPTYEYLFRRKLVDSPLCPICGREAETIEHMFLKCAWTQPIWFGSDVQWSVDMDSMHSFPVWFCQKLEEIKRVHPNAKQISALVVSICWAIWKGRNEFVLEDKPVNPMSALINLS	776

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto11g0952	776	Pfam	zinc-binding in reverse transcriptase	619	703	IPR026960	-
	Sto11g0952	776	Gene3D	Ribonuclease Inhibitor	70	241	IPR032675	-
	Sto11g0952	776	SUPERFAMILY	L domain-like	74	421	-	-
	Sto11g0952	776	Gene3D	Ribonuclease Inhibitor	242	427	IPR032675	-
	Sto11g0952	776	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	57	509	IPR044974	GO:0006952
	Sto11g0952	776	PANTHER	NB-ARC DOMAIN PROTEIN	57	509	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto11g0952	Sto-Chr11	9958430	9963632	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto11g0952	134	332	WRKY Transcription Factor Family	AT4G12020	32.212	6.01e-11	64.7

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto11g0952	-		-	gmx:100810811	771.541

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