Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0946 ATGAGCGATCATTTGGTATTGTACGTTGACCGTCTTGTACGGCCCGCTGCCGCTGAACCGGTGACGCAGCCGGCTGAGGTCCCGTCTGAGCCGGCACCGTCTTTGGATGCGGCGGGGCCGTCTGGGTCTGAGAATGATGAGGATGAGCCCCTGATCCAGATGGTAGAGTGTCGCATTTGTCAAGAGGAGGACAGCGTTAATAATTTGGAGACTCCCTGTGCATGCAGTGGCAGTCTTAAGTTTGCTCACAGAAAGTGCGTTCAGCATTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATCAGCCATACCAACCTGGTTATACTGCCCCACCACCTCGCCCTCATCCTGAAGAAACAACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCACGCCTTTGGACTTGCGTGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAGTTTTTGGAAGCTGAATATGATGAGTATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGTCGCTCAGCTGCTCTAATTTTAATGGCCCTTTTACTCTTGCGGCATGCACTATCTGTTACCGATTCTGATGCTGATGATGATCCGTCTACTTTTTTCTCTCTTTTCTTACTTCGAGCAGCTGGATTTCTTTTACCTTGCTACATAATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCAGCGGCATTGGCAGCGACTCAAGTTGCTTTCGTTTTACAGTCCGGGCAGCGtaggggtttacagtttgcCATAGCACCAGCTGGACCCACAGTGAATTCACAACAGGAAAATGTGTAG 831 0.4874 MSDHLVLYVDRLVRPAAAEPVTQPAEVPSEPAPSLDAAGPSGSENDEDEPLIQMVECRICQEEDSVNNLETPCACSGSLKFAHRKCVQHWCNEKGDIICEICHQPYQPGYTAPPPRPHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDSDADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPAGPTVNSQQENV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0946 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 112 IPR013083 -
Sto11g0946 276 Pfam Protein of unknown function (DUF3675) 108 226 IPR022143 -
Sto11g0946 276 SUPERFAMILY RING/U-box 55 107 - -
Sto11g0946 276 SMART ringv_2 56 103 IPR011016 GO:0008270
Sto11g0946 276 Pfam RING-variant domain 57 102 IPR011016 GO:0008270
Sto11g0946 276 CDD RING_CH-C4HC3_MARCH 57 103 - -
Sto11g0946 276 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 270 IPR033275 -
Sto11g0946 276 Coils Coil 145 165 - -
Sto11g0946 276 ProSiteProfiles Zinc finger RING-CH-type profile. 49 109 IPR011016 GO:0008270
Sto11g0946 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 270 - -
Sto11g0946 276 MobiDBLite consensus disorder prediction 19 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0946 Sto-Chr11 9907570 9909965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0946 20 106 C3H Transcription Factor Family AT2G22120 31.111 4.54e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0946 - - gmx:100779674 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0946 11 9907570 9909965 Sto11g0946 11 9907570 9909965 ECH