Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0938 ATGGCATCTGAACCCGAGGTCTCTGAGATTTCACCTCTGTTCGAGAGTTTCACGAGAAACAGAGAGCTTGCTCTGTTCTTACCCTTCATCTTCGGCTTCTCCTCCGCTTCCCCACGAAGAGACAGCGAAGACCCACATCAGGAAACCGAGAATCCAGAAAATCCCCATCGTCAAAGAGTGATCTTGATCAACCCCTTCACGCAGGGGATGATGGTGATTGACGGTGGATCGGGCCTCGATGCTCTGTTTCGTGAAATGGGTAGTGCCAAAAATGGGCGGCCTCCGGCGACGAAGGAGTCAATAGAAGCGATGGGGAGTGTGGAAATCGGAGAAGGTGAAGATGGGGAGTGTGCGATTTGTTTGGAGGAATGGGAGATAGGTGGGGTTGCGAAGGAGATGCCATGTAAGCATAAGTTTCATGGGAATTGTATAGAGAAGTGGTTGGGGATTCATGGGAATTGCCCTGTTTGTAGGTATGAGATGCCTGTGGAAGAGAAAGAAGTGGGGaagaaagatgatgatgatggtgatgagggagaagagagaagaaggagaCAAGTTTGGGTTAGTTTCTCTTTTAGAAATGGGGATCAGAATCAAGCTGCTGCTTCTGGTGATTCCATTGATTCTTCATCAACACAAAGAGGTGATGGTGAGGTTGAGAGTtag 669 0.4529 MASEPEVSEISPLFESFTRNRELALFLPFIFGFSSASPRRDSEDPHQETENPENPHRQRVILINPFTQGMMVIDGGSGLDALFREMGSAKNGRPPATKESIEAMGSVEIGEGEDGECAICLEEWEIGGVAKEMPCKHKFHGNCIEKWLGIHGNCPVCRYEMPVEEKEVGKKDDDDGDEGEERRRRQVWVSFSFRNGDQNQAAASGDSIDSSSTQRGDGEVES 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0938 222 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Sto11g0938 222 MobiDBLite consensus disorder prediction 39 55 - -
Sto11g0938 222 MobiDBLite consensus disorder prediction 191 215 - -
Sto11g0938 222 Pfam Ring finger domain 116 158 IPR001841 -
Sto11g0938 222 MobiDBLite consensus disorder prediction 165 222 - -
Sto11g0938 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 164 IPR013083 -
Sto11g0938 222 SUPERFAMILY RING/U-box 106 163 - -
Sto11g0938 222 CDD RING-H2_PA-TM-RING 116 158 - -
Sto11g0938 222 MobiDBLite consensus disorder prediction 37 57 - -
Sto11g0938 222 PANTHER - 17 170 - -
Sto11g0938 222 MobiDBLite consensus disorder prediction 165 188 - -
Sto11g0938 222 SMART ring_2 117 157 IPR001841 -
Sto11g0938 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 17 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0938 Sto-Chr11 9864029 9864697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0938 1 214 C3H Transcription Factor Family AT1G26800 48.165 4.49e-63 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0938 - - lang:109356689 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0938 11 9864029 9864697 Sto11g0938 11 9864029 9864697 ECH