Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0935 ATGGCACCCTCAGCCTCAGCTTGGACTACTACTTTCCCATTTATTACTACTTCTACCACTGATGATCATGCTTTGGAGGCCAAAGCCTGTTCTGATTCtagtaatgatgatgatgatcatcaGGAAAACCCTAATGAGAATTCTGTGAAGGAGGCAGATAATTCTGGGCAGTCCAAGCTCTGTGCAAGAGGCCATTGGAGGCCAGCAGAAGATGCTAAGCTCAAGGAGCTTGTGGCCCTCTATGGCCCTCAGAACTGGAATCTCATAGCAGAGAAGCTGAGGTGGTTCAACCAGTTGGATCCAAGGATCAATAGAAGGGCATTCagtgaagaagaggaagagaggcTAATGCAAGCACATAGGATATATGGGAACAAATGGGCCATGATTGCTAGATTGTTCCCAGGGAGGACAGATAATGCTGTGAAGAATCATTGGCATGTTATAATGGCTAGGAAGTACAGAGAACAATCCAGTGCTTATAGAAGAAGAAGGCTGGCTCAATCTGTGTACAGAAGATCAATGGAGGAAGATAATCCAAACTtagccaccaccaccaccaccaccatctcaGGGACAGAACAACCCTATAACATTATGCCTCCTTTCTTCCATGGAGCTAATAGTGGGCTTCCTCTCTATGCTCCTCATCAAACACCACCATTTGATCACATCTCTGgtTTTGGTCAGAGCAGTAGATACAGAGAAAGCAGTAGGCCAAGTAGTGAATATGAACTTCACCATCATTATCATCTAAATAGCTTCTtctaccatcatcatcatcataataataataatttgccTCCATATTTGATGCCAATGACACACTCAACCTCAAACATGAATCCCAATTTCCAGTGCTTCTCATCAAATTCCATTGCCCCTAAGGCTTCTTCTTCAAGTGAACCATCATCATCAGAGAAGAGGGATGGAGGAGGAGTAGTAGCAAGTGAGAATGCAATTCCACCTCCATTTATTGACTTTCTAGGGGTAGGAGCCACATGA 1005 0.393 MAPSASAWTTTFPFITTSTTDDHALEAKACSDSSNDDDDHQENPNENSVKEADNSGQSKLCARGHWRPAEDAKLKELVALYGPQNWNLIAEKLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLAQSVYRRSMEEDNPNLATTTTTTISGTEQPYNIMPPFFHGANSGLPLYAPHQTPPFDHISGFGQSSRYRESSRPSSEYELHHHYHLNSFFYHHHHHNNNNLPPYLMPMTHSTSNMNPNFQCFSSNSIAPKASSSSEPSSSEKRDGGGVVASENAIPPPFIDFLGVGAT 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0935 334 Pfam Myb-like DNA-binding domain 63 93 IPR001005 -
Sto11g0935 334 Pfam Myb-like DNA-binding domain 105 148 IPR001005 -
Sto11g0935 334 MobiDBLite consensus disorder prediction 27 47 - -
Sto11g0935 334 CDD SANT 107 147 IPR001005 -
Sto11g0935 334 ProSiteProfiles Myb-like domain profile. 100 150 IPR001005 -
Sto11g0935 334 SUPERFAMILY Homeodomain-like 63 146 IPR009057 -
Sto11g0935 334 MobiDBLite consensus disorder prediction 292 307 - -
Sto11g0935 334 MobiDBLite consensus disorder prediction 292 334 - -
Sto11g0935 334 Gene3D - 106 178 - -
Sto11g0935 334 ProSiteProfiles Myb-like domain profile. 63 93 IPR001005 -
Sto11g0935 334 SMART sant 104 152 IPR001005 -
Sto11g0935 334 SMART sant 62 101 IPR001005 -
Sto11g0935 334 PANTHER MYB PROTEIN-RELATED 26 334 - -
Sto11g0935 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 93 IPR017930 -
Sto11g0935 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 154 IPR017930 -
Sto11g0935 334 MobiDBLite consensus disorder prediction 27 59 - -
Sto11g0935 334 Gene3D - 63 104 - -
Sto11g0935 334 PANTHER TRANSCRIPTION FACTOR MYB105 26 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0935 Sto-Chr11 9837087 9838366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0935 43 170 MYB Transcription Factor Family AT1G69560 71.014 1.15e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto11g0935 Myb_DNA-binding 6.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0935 K09422 - vvi:100253313 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0935 11 9837087 9838366 Sto11g0935 11 9837087 9838366 ECH