Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0933 ATGGAATTGGAgcccacaaaccctaaattcctcaAGAAGCTTAAAGCCGGTCTGAGCTGCTCATCCACGCTGCAAACCAAAAGCCTAGGGCAGCGTATGATCGATTTCCGGATATCagggaagggaatggcaacCTCATTCAATCGCTCGATGCCCATGGAGGAAAGGCAGTGCTCCACAGATTTGAGGGAGGAAAGAGGAAGGGATCGGAATTTGGGATTTTGCCTGAGGGCTTTGCTGGAGTTGACGTTGAGTTTCTCGAGGATGGGCAGGGTAAAGCTAAAAATAAAGAGGCTAGAGAATATCAATGGCCGTCAGGCAACTTTTGCTAAAAGGAGACTTGGAATCATGAAAAAGGCTTCAGAGTTATCTATACTGTGCGATATAGATATTGTACTTCTTATGTTCTCACCAACTGGGAAGCCAGCAATATGCAAAGGGAAGCGCAGTAACCTTGAGGAGGTAATTGCAAAGTTTGCTCAACTAACTCCGCAGGAACGGGCAAAAAGGAAGTTGGAGAGTCTTGAAGCACTGAAGAAAACGTTCAAGAAGTTAGACCATGATGTAAATATACAAGAATTTCTTGGTACAAGTAGTCAGACAATTGAGGACCTAAAAAATGAAGCCAACCTATTGAATAATCAAATTTCTGAACTACATACGAGATTAAgCCATTGGACTGAGATTGATAAAATCAACAGTGTGGAACAATTGGGACAGATGGAAAATTCTCTCCGGGAGTCAATTAATCAAATTCAATCCCGCAAGGAAAATATACAAAAGCAACAATTCATGCCACTGCAGTGCACTAACCAGTTCAATGACATTCAGATTCCCCTTAGAATGAGCTCTGAGCTTCAACCTCTATCATGGATTGCCCACAACGACAGCCAACATATGGTTTTACCTGACGACTCAAACTTGCTTCTCCACAAAGATGTAGAGTGCTCTGCAAGCTCTTCTTTTGGGAGTTACACTAGCTACCTTGGCTCGAGTACAAAAACAGATCTTTCTAATCCCGGGCAAGAAAACGGTGTCCTCAGTGATTTGACAAGTACTGCTTCTCTGAGACTACAGTTAGGAGGGCAACTTCAATACCTACCATACAATTTCAATTTATTGAATGACCACAAGTTCCAGCCAGCTGCAGAGATGAACTCCCATGAAAACCCCATAGATTATCATCCTAATAAAAGCTTTGAAGCCCCTACACCTGTGTACGAAACTAACCTCCTTGGATGGGCTCCCACGGCAGGACCTTGTTCTGTTACTACCATGTTTGATGAGCATTTGTTTGGCCCAGCAAGTTTCCCACAGGAAGCAACCTGCCAGTCTTTTGTAGTTACTCACGGTGTGGCTGGGCTGAATCAAAAGGGCAAGAGGCACAAGGTTATTATGGCTGCTGAAAGCATGGCgcttttcttcttcctcacatGGATAGAGTTGTTTATAGAGTCATATACAGCGAAATGCTGGCTGATTCAGAATAAAATGGGTTTCATTTTGGCCCAAAAACTCATTTCTGTATCAGCTTCTTCGGAATTGGGCACCAGTGTAGGTTTGGCCAAAGGACCAGGATGGTGGGGCAACATTGTAGGACACCACTGTACGGCCGTTACTGGCTGTGACCTTGAAGGAGAGGCTTTGGCCATTGAGATAGTTGTTGCTCTGCCAATTCTGGCCCCAGTTTCTTGA 1695 0.4254 MELEPTNPKFLKKLKAGLSCSSTLQTKSLGQRMIDFRISGKGMATSFNRSMPMEERQCSTDLREERGRDRNLGFCLRALLELTLSFSRMGRVKLKIKRLENINGRQATFAKRRLGIMKKASELSILCDIDIVLLMFSPTGKPAICKGKRSNLEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQEFLGTSSQTIEDLKNEANLLNNQISELHTRLSHWTEIDKINSVEQLGQMENSLRESINQIQSRKENIQKQQFMPLQCTNQFNDIQIPLRMSSELQPLSWIAHNDSQHMVLPDDSNLLLHKDVECSASSSFGSYTSYLGSSTKTDLSNPGQENGVLSDLTSTASLRLQLGGQLQYLPYNFNLLNDHKFQPAAEMNSHENPIDYHPNKSFEAPTPVYETNLLGWAPTAGPCSVTTMFDEHLFGPASFPQEATCQSFVVTHGVAGLNQKGKRHKVIMAAESMALFFFLTWIELFIESYTAKCWLIQNKMGFILAQKLISVSASSELGTSVGLAKGPGWWGNIVGHHCTAVTGCDLEGEALAIEIVVALPILAPVS 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0933 564 Coils Coil 242 262 - -
Sto11g0933 564 Gene3D - 103 184 IPR036879 GO:0003677|GO:0046983
Sto11g0933 564 SMART madsneu2 89 148 IPR002100 GO:0003677|GO:0046983
Sto11g0933 564 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 89 433 - -
Sto11g0933 564 ProSiteProfiles MADS-box domain profile. 89 141 IPR002100 GO:0003677|GO:0046983
Sto11g0933 564 Coils Coil 195 222 - -
Sto11g0933 564 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 99 142 IPR002100 GO:0003677|GO:0046983
Sto11g0933 564 PRINTS MADS domain signature 91 111 IPR002100 GO:0003677|GO:0046983
Sto11g0933 564 PRINTS MADS domain signature 111 126 IPR002100 GO:0003677|GO:0046983
Sto11g0933 564 PRINTS MADS domain signature 126 147 IPR002100 GO:0003677|GO:0046983
Sto11g0933 564 SUPERFAMILY SRF-like 90 183 IPR036879 GO:0003677|GO:0046983
Sto11g0933 564 Coils Coil 165 185 - -
Sto11g0933 564 CDD MADS_SRF_like 90 170 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto11g0933 564 PANTHER SERUM RESPONSE FACTOR HOMOLOG 89 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0933 Sto-Chr11 9815755 9824162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0933 89 438 Type I MADS-box Gene Family AT2G03060 48.346 8.78e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto11g0933 SRF-TF 3.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0933 - - lang:109356063 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0933 11 9815755 9824162 Sto11g0933 11 9815755 9824162 ECH