Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0890 ATGCCATTATTCAGATCGTGTTCTACCTTAAGGTCTCTCACCCAACTCCATGCCCACCTTGTGGTGACCGGCCTTCACAAAAACCCTCTCGCTTCCACTAAACTCATCGAGTCTTACGCCCAAATGGGTACCCTCAGCTCTTCACGACTTGTTTTCGCGACCTTCTCGTCTCCGCCGGATTCCTTCATGTGGGGCGTCCTCATGAAATGTCACTTGTGGAATCACTTATTCGAACAAGTCATTTCGCTTTTCCATCGTATGATTTCTCTGCAGACCCAGGTTTGCAGATTCGTGTATCCCTCTGTTTTGAGGGCTGTTTCTGGAATTGGTGACTTGGGTGTGGGTATGAAGCTTCATGGGAGGATTGTTAAATGCGGGCTTGATACTGATACTGTGATTGAAACTTCGTTGCTTGGTATGTATGGTGAACTGTGCTGCTTAGATGATGCACGAAAGGTGTTTGACGAAATGGGTGAAAGGGATGTGGTTTCGTTGAGTTCTATAATCTCATCTTACGTTGAGAATGGACAGGCAAGAGAAGGACTGGAAATGTTTCGTTATATGGTTTCTGAAGGGATTGAACCTGACTCTGTTTCAATGCTTAGTGCGGCTGAGGCTTGTGCCAAATTTGGTTGTTTAAGGCTAGCCAAATCGGTCCATGGACATGTAATCAGAAGAGAATTGGGTGGTGCTGGAAGTTTgaataattttcttatttttatgtacAGCCAGTGTCATCACTTAAGTGGTGCAGAGAAAATCTTTGAGAACCTCACTAATCCAAGTACTGCTTCTTGGACGTCCATTATTTCATCCTATAATCAAAGTGGATGCTTTCATGAAGCCATTGATACTTTTATTCAAATGCAGGAGTCAAATATGGAACCCAACGCCGTGACGATGATCAGTATTCTGAATTCCTGTGCGAGATTAGGATGGCTGAAAGAGGGAAAGTCAGTCCATTGCTTTATTTTGAGAAAGGCCATGGATGCTGATCTTGACCTGGGGTCTGCACTAATAGATTTCTATGCTGCTTGTTGGAAGAGAAACAGTTGCGAAAATCTTCTCCATTTAACTGGAAACAACAGTATCATAACATGGAATACACTGATATCATTATATTCTCGGGTGGGTTTTTACAAGGAGGCCATAGTACTCTTTGCAGATATGTTGAGAAAGGGGATAACGCCAGACTCATTTAGCCTAGCAAGTTCAATTTCAGCCAGTGCAAGTGTGGGTTCAATACAAATTGGACAGCAGATACACAGCCATGTCAAGAAAAGAGGCTTGGTGAATGAGTTTGTGCTTAACTCCTTGATCGATATGTATTCGAAATACGGCCTTGTGGATTCGGCATACATGATTTTCGAGAAGATTACACAGAAAAGTGTTGTGACTTGGAACTGTATGATGTCTGGGTTTGCTCAAAATGGCATTTCAGTAGAAGCACTCAACCTATTTGAAGAAATGTACTTTAATTGTCTTGAGATCAATGATGTAACCTTCTTAACTGCAATTCAAGCTTGCTCCAATATGGGTTATCTAGAAAAGGGGAAATGGATTCACAATAAGATCATTACATGTGGTGTAGAGAAGGATCTTTATATTGATACAGCTCTAACTGACATGTATGCCAAATGTGGAGACCTTCAAACAGCGCAAGGAGTTTTCGATAGCATGTCAGAGAAAAGTGTGGTGTCATGGAGTGCCATGATTGCTGCTTATGGTATGCATGGACAAATTAATGATGCCATATGGCTCTTCAGTAAAATGGTAGACTCAGGTATAAAGCCAAATGAAGTAACCTTCATGAATATCTTATCTGCCTGCAGTCATGCAGGATCAGTGGAAGAAGGGAAGTTATATTTCAACTCAATGAGAGAATATGGCATTGAACCCAACACAGAACACTTTGCCTCTATTGTTGACCTTCTCAGCCGTGCTGGTGATGTCGATGGAGCATTCAAATTAATAAAGTCCATGCACCTGCCTGTAGATGCTAGCATATGGGGAGCTCTGCTTAATGGGTGTCGAATACACAGGAGGCTGGACTTGATTAGAAGCATAACGAGGGAGCTTATGGAGATTAGTACAGATGATACAGGATATTATACTTTATTATCTAATATATTCGCTGAAGGAGGAAACTGGGATGAATCCAGAAAGGTGAGATCAATGATGGAAGGTAATGGTCTACAGAAGGTCCCTGGATATAGTACTATTGAGATTGATAAGAAAATCTACAGATTTGGAGCTGGAGATACTTCTGAATGGCAAATGAAAGAAATTTACATGTTTTTGGAGAATTTTCAGAGTTTAGCACAGGAACATGGGTGTGTAGGTAGTCAATTGTATAGAACTAGTATGTTTTCTGATGATAATAGTATTTACAAGTTAGCAGTTGCAAGCTAG 2412 0.4104 MPLFRSCSTLRSLTQLHAHLVVTGLHKNPLASTKLIESYAQMGTLSSSRLVFATFSSPPDSFMWGVLMKCHLWNHLFEQVISLFHRMISLQTQVCRFVYPSVLRAVSGIGDLGVGMKLHGRIVKCGLDTDTVIETSLLGMYGELCCLDDARKVFDEMGERDVVSLSSIISSYVENGQAREGLEMFRYMVSEGIEPDSVSMLSAAEACAKFGCLRLAKSVHGHVIRRELGGAGSLNNFLIFMYSQCHHLSGAEKIFENLTNPSTASWTSIISSYNQSGCFHEAIDTFIQMQESNMEPNAVTMISILNSCARLGWLKEGKSVHCFILRKAMDADLDLGSALIDFYAACWKRNSCENLLHLTGNNSIITWNTLISLYSRVGFYKEAIVLFADMLRKGITPDSFSLASSISASASVGSIQIGQQIHSHVKKRGLVNEFVLNSLIDMYSKYGLVDSAYMIFEKITQKSVVTWNCMMSGFAQNGISVEALNLFEEMYFNCLEINDVTFLTAIQACSNMGYLEKGKWIHNKIITCGVEKDLYIDTALTDMYAKCGDLQTAQGVFDSMSEKSVVSWSAMIAAYGMHGQINDAIWLFSKMVDSGIKPNEVTFMNILSACSHAGSVEEGKLYFNSMREYGIEPNTEHFASIVDLLSRAGDVDGAFKLIKSMHLPVDASIWGALLNGCRIHRRLDLIRSITRELMEISTDDTGYYTLLSNIFAEGGNWDESRKVRSMMEGNGLQKVPGYSTIEIDKKIYRFGAGDTSEWQMKEIYMFLENFQSLAQEHGCVGSQLYRTSMFSDDNSIYKLAVAS 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0890 803 Gene3D Tetratricopeptide repeat domain 424 493 IPR011990 GO:0005515
Sto11g0890 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Sto11g0890 803 Pfam PPR repeat 163 193 IPR002885 -
Sto11g0890 803 Pfam PPR repeat 62 89 IPR002885 -
Sto11g0890 803 Pfam PPR repeat 135 161 IPR002885 -
Sto11g0890 803 Pfam PPR repeat 640 661 IPR002885 -
Sto11g0890 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Sto11g0890 803 Pfam E motif 687 742 IPR046848 -
Sto11g0890 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Sto11g0890 803 Gene3D Tetratricopeptide repeat domain 504 616 IPR011990 GO:0005515
Sto11g0890 803 Gene3D Tetratricopeptide repeat domain 232 318 IPR011990 GO:0005515
Sto11g0890 803 Gene3D Tetratricopeptide repeat domain 319 423 IPR011990 GO:0005515
Sto11g0890 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 598 IPR002885 -
Sto11g0890 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Sto11g0890 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 599 633 IPR002885 -
Sto11g0890 803 TIGRFAM PPR: pentatricopeptide repeat domain 365 399 IPR002885 -
Sto11g0890 803 TIGRFAM PPR: pentatricopeptide repeat domain 164 197 IPR002885 -
Sto11g0890 803 TIGRFAM PPR: pentatricopeptide repeat domain 601 635 IPR002885 -
Sto11g0890 803 TIGRFAM PPR: pentatricopeptide repeat domain 465 498 IPR002885 -
Sto11g0890 803 TIGRFAM PPR: pentatricopeptide repeat domain 566 600 IPR002885 -
Sto11g0890 803 TIGRFAM PPR: pentatricopeptide repeat domain 265 298 IPR002885 -
Sto11g0890 803 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 262 397 - -
Sto11g0890 803 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 394 769 - -
Sto11g0890 803 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 9 270 - -
Sto11g0890 803 Gene3D Tetratricopeptide repeat domain 73 229 IPR011990 GO:0005515
Sto11g0890 803 Pfam PPR repeat family 563 611 IPR002885 -
Sto11g0890 803 Pfam PPR repeat family 261 310 IPR002885 -
Sto11g0890 803 Pfam PPR repeat family 462 510 IPR002885 -
Sto11g0890 803 Pfam PPR repeat family 363 401 IPR002885 -
Sto11g0890 803 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 262 397 - -
Sto11g0890 803 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 9 270 - -
Sto11g0890 803 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 394 769 - -
Sto11g0890 803 Gene3D Tetratricopeptide repeat domain 617 791 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0890 Sto-Chr11 9513257 9515668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0890 99 764 Glycoside Hydrolase AT3G49170 31.268 6.96e-115 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0890 - - aprc:113870383 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0890 11 9513257 9515668 Sto11g0890 11 9513257 9515668 ECH