Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0807 ATGTGTGACAAAGAAAAGTTTGAGCTAGATAGAAACGAGGATCCTATGAGTTTTTCAACTAGTATGCCCTTGGATTGGAGATTTGGAGACTCATATGTTCCAAACTTCTGGGATCATCCCATCAATGCTCAAAACTTGGGATTATGTGACGTCAATGTCCACAACAATGGTGGTAGCTCCTCTAACGCAATTGGAAACAGAAACGATGGCCTTCCCTTTTCTTCTAGAGCTGTTCATGACAAAACAATGGAAATGGGTTGGAAACCTGCAAATCCAGTTTTATCAAATGTACCAGGAATGTTTCCACAGAGTTTATCTCAGATTCCCACTGATTCTGCATTTATCGAGCGAGCTGCGAGATTCTCATGCTTCAGTGGAGGGAATTTTGGTGATATGCTGAACTCATTTGGGATTCCTCAATCCATGAGTCTGTATGCTAGACAAGATGCTCTTACGGGCCATGGGTTAAAATCAGCAGCTGGAGGACAGTCTCAAGAAAATGATCTGAATGTAGGTGAAGAAGCAGAAAAAAATGTGTCTCCTCCATCTGTACAGAAGTTGGCTACTAATGGAAGCCCACTCAAGAATGACAAAAGAAGTGAAAGCCTTGTAACAACATCTCAAGATGAGGCAAAACAAGCTATAGGCAGGTCTGTTAATGAATCTGATAGAACAGAATcaagtggtgatgatgatggtgcTGGTGGTGGTCAAGCGGATAAGCCAATGTTGGAGGATACAAGTGGGGGACCTTCTATCAAAGGACTAAActcaaagaaaaggaaaagaagtgGGCAGGATGCTGATAATGAAAAAGCCTGTGTTGCTCCTGAACTTCCAAGTGAAGCTGCAACGGACAATTCTGAGAGTCCACAGAAAGGAGGCCAACGACCAACTTCAACAACCAAGACTTCTGGGAAGAATGCAAAACAGGGTTCTCAAGCATCTGATCCACCAAAGGAGGAATACATACATGTCAGGGCTCGAAGGGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTGAGGAGGGAGAAGATCAGCGAAAGGATGAAATTTCTTCAGGATCTTGTACCTGGATGCAGCAAGGTCACCGGCAAGGCGGTTATGCTAGATGAAATAATTAACTATGTACAGTCACTTCAAAGACAGGTTGAGTTTTTGTCTATGAAGCTTGCGACAGTAAATTCACGGCTGGATTTTAATCTTGAAGGACTTCTTGCTAAAGATATTCTTCAGCAACGGCCTGGCCCTTCATCTGCATTGGGGTTTACTCCAGAAATGCCTATGGTTTTTCCTCCAATACATCCATCTCAACCAGGACTTCTGCAATCAACTCTTCCTGGCATAGCAAACTCATCAGATATACTTCGGAGAACCATTCATCCACAGTTAGCTCCTTTAGCTGGAGGATTCAAGGATCCTAACCAGCTACCTGATATGTGGGAGGATGAGCTGCACAATGTTGTACAGATGAGCTTTCCGACAACTGCTGCCCCGAGTAGCCAAGATGCAGATGGCATTATACAAGTAATGGTGTGGACTCTTGAGTGTGATCACATAACCACAGGAGGGGACTCTGAGGGTAGAAGTGGAAGTGTCTCCACAGAAGCAGGTTTGCTTACTAAATATGCATTTGAATTGAAGATGCAAAGCTTGGCCTTCTTTGTTGGACTGTGCATAGTTTGGTTTGATCACTGA 1704 0.4261 MCDKEKFELDRNEDPMSFSTSMPLDWRFGDSYVPNFWDHPINAQNLGLCDVNVHNNGGSSSNAIGNRNDGLPFSSRAVHDKTMEMGWKPANPVLSNVPGMFPQSLSQIPTDSAFIERAARFSCFSGGNFGDMLNSFGIPQSMSLYARQDALTGHGLKSAAGGQSQENDLNVGEEAEKNVSPPSVQKLATNGSPLKNDKRSESLVTTSQDEAKQAIGRSVNESDRTESSGDDDGAGGGQADKPMLEDTSGGPSIKGLNSKKRKRSGQDADNEKACVAPELPSEAATDNSESPQKGGQRPTSTTKTSGKNAKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNSRLDFNLEGLLAKDILQQRPGPSSALGFTPEMPMVFPPIHPSQPGLLQSTLPGIANSSDILRRTIHPQLAPLAGGFKDPNQLPDMWEDELHNVVQMSFPTTAAPSSQDADGIIQVMVWTLECDHITTGGDSEGRSGSVSTEAGLLTKYAFELKMQSLAFFVGLCIVWFDH 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0807 567 Coils Coil 379 399 - -
Sto11g0807 567 Gene3D - 329 404 IPR036638 GO:0046983
Sto11g0807 567 Pfam Helix-loop-helix DNA-binding domain 335 383 IPR011598 GO:0046983
Sto11g0807 567 MobiDBLite consensus disorder prediction 283 315 - -
Sto11g0807 567 SMART finulus 338 388 IPR011598 GO:0046983
Sto11g0807 567 MobiDBLite consensus disorder prediction 182 215 - -
Sto11g0807 567 PANTHER BHLH TRANSCRIPTION FACTOR 28 511 - -
Sto11g0807 567 MobiDBLite consensus disorder prediction 216 230 - -
Sto11g0807 567 MobiDBLite consensus disorder prediction 172 320 - -
Sto11g0807 567 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 28 511 IPR024097 GO:0006355
Sto11g0807 567 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 382 IPR011598 GO:0046983
Sto11g0807 567 CDD bHLH_AtBPE_like 322 407 - -
Sto11g0807 567 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 401 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0807 Sto-Chr11 8927853 8931042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0807 30 495 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 46.008 7.92e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto11g0807 HLH 7.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0807 - - gmx:100797720 696.812