Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0708 ATGACTTGTTCGGGTAATAAAAGCGTCGCTAAAGCCGTCGCGGCCAAAACGGCAAGAGCGTGCGATAGCTGCATAAGGAAACGCGCGCGTTGGTACTGTGCAGCCGACGATGCTTTCCTCTGCCAATCCTGCGATTCCCTCGTCCACTCCGCCAATCCATTGGCTCGCAGACACCAGCGCCTCCGCCTGAAAACGTCGTCGTTCAAGCCCTTCGCCTCCTCCGATCCCCCCGCCTGGCACACCAAGAAGCCTCGCACGCCTCGAAACGCCAAGCACCATCTCTCTTGGGCAAAACATCAAACACCTAGAGGGCATCCAGATCAGAACGAGACCTGTTCTAGAAACCCCTTCTTCCATTACCTGGTGCCGGAAGTGGGGTCCGATGAATACTCCAATTCCCACGACGAAAACGACGAGCAGCTCCTCTATCGCGTCCCCATCTTCGACCCCTTCGTGGAAGAAGCCCAGCTCTGTTCTACCAAGACCGAAGAAACCAGAGCTCCATCATCGGAGAACAATAACCACGGCAACGCCACCGCCAGAAACGACAGCGTGGAAGAGTTTCTTCCGTCGGAGATGGAGCTAGCAGAGTTCGCGGCTGATGTGGAGAGTCTATTAGGGAGGGGACTAGAGAATGAGTGTATAGGAATGGAAGATTTGGGGCTAATTGAtaatactactactactactagtgTGAAGGTagaggatgaagaagaaagaattaGCCCTGCTTGTAAAGTAGAGTTAGATTCGAGGAGGGATGAGATTGGAAGTATGAGAGAGGCATttgaattgagcttggattacGATGAATCTCCAGGTGCCACGTGTGAGGGAAAGAGGAATATATTATTGCTGCAGCTAGACTACGAAGCAGGGAGATGCGGAATGATGATGGAGGTGAATTACGGGAGGGCCATGGGAGACGGAGGGAGAGAAGCGAGGGTGTCGAGGTATAGAGAGAAGAGGAGGACGAGGTTGTTCTCGAAGAAGATAAGGTACGAGGTTAGGAAATTGAATGCGGAGAAGAGACCCAGAATGAAAGGGAGGTTTGTGAAGAGGGCTTCTTTTGCTGGTGTTGCAGTACaggcaccaccaccaccacctgcTTTTCCTTTGATTTGCTCCGCcaataaataa 1140 0.4833 MTCSGNKSVAKAVAAKTARACDSCIRKRARWYCAADDAFLCQSCDSLVHSANPLARRHQRLRLKTSSFKPFASSDPPAWHTKKPRTPRNAKHHLSWAKHQTPRGHPDQNETCSRNPFFHYLVPEVGSDEYSNSHDENDEQLLYRVPIFDPFVEEAQLCSTKTEETRAPSSENNNHGNATARNDSVEEFLPSEMELAEFAADVESLLGRGLENECIGMEDLGLIDNTTTTTSVKVEDEEERISPACKVELDSRRDEIGSMREAFELSLDYDESPGATCEGKRNILLLQLDYEAGRCGMMMEVNYGRAMGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAGVAVQAPPPPPAFPLICSANK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0708 379 MobiDBLite consensus disorder prediction 161 181 - -
Sto11g0708 379 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 6 272 - -
Sto11g0708 379 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 304 360 - -
Sto11g0708 379 ProSiteProfiles CCT domain profile. 312 354 IPR010402 GO:0005515
Sto11g0708 379 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Sto11g0708 379 SMART bboxneu5 16 63 IPR000315 GO:0008270
Sto11g0708 379 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 304 360 - -
Sto11g0708 379 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 6 272 - -
Sto11g0708 379 Pfam CCT motif 312 354 IPR010402 GO:0005515
Sto11g0708 379 CDD Bbox1_BBX-like 21 63 - -
Sto11g0708 379 Pfam B-box zinc finger 18 60 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0708 Sto-Chr11 8084180 8085508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0708 7 354 C2C2-CO-like Transcription Factor Family AT1G25440 42.619 6.00e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sto11g0708 CCT 1.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0708 - - gmx:100782921 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0708 11 8084180 8085508 Sto11g0708 11 8084180 8085508 ECH