Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0617 ATGGGGGATCACTTTGTATTGCTGGTTGATCGATTGCTTACAGAATCCACATTAGAAGCTGCACTTGAAAGTAGAAATCGTGCAATGCAGGAGGCTGCATCCTCTGCGGTGAGTGAAGCAGCAGAAGTTGATCTCTCTTTGAAGAAGAAGAGTCTGGAAGATGCCAAATCTCCAAGGAAAATTGTAGAATGCAGAATATGtcatgatgaagatgaagattctAATATGGAGACACCCTGCTCCTGTTGTGGGAGTTTGAAGTATGCACACCGCAGATGTGTACAAAGGTGGTGCAATGAGAAGGGTGACACCACCTGTGAGATATGCCACCAGCAATTCAAACCTGGTTATACAGCTCCACCTCCTCTTTTTCAATTCGGACGCATTCCAATGACTTTCAGGGGTAATTGGGAGATTTCCAGAAGAGACTTGAACAGTACTCATTTGGTTAGCATGGTTTCCACTGACCAGAATCTCATCAATTCTAACTATGATCAGTATTCAGCTTCAACTTCCAGTGGTTTCCTATGCTGTCGTTCCGTCGCTCTAATtTTCATGGTTCTACTGATTTTAAGACATGCACTTCCCCTCTTAATCAGTGGAGACAAGGACTATTCCTTCTCACTCTTCATGTTGTTACTATTTCGAACTGCCGGAATTGTTCTGCCTGTTTACTTTGTGGTGAGAGCAGTGACATCGATACAACGGCATCGGCGTCAATTACGGGAGCCTCCTAATGCCGAGGTCAATCTCTCCGACGATGACGGCGGTGAGCAAGTAGCTTTGCAGTCTCAGCTTCATGTCATCCGTGTTCAGTGA 819 0.4408 MGDHFVLLVDRLLTESTLEAALESRNRAMQEAASSAVSEAAEVDLSLKKKSLEDAKSPRKIVECRICHDEDEDSNMETPCSCCGSLKYAHRRCVQRWCNEKGDTTCEICHQQFKPGYTAPPPLFQFGRIPMTFRGNWEISRRDLNSTHLVSMVSTDQNLINSNYDQYSASTSSGFLCCRSVALIFMVLLILRHALPLLISGDKDYSFSLFMLLLFRTAGIVLPVYFVVRAVTSIQRHRRQLREPPNAEVNLSDDDGGEQVALQSQLHVIRVQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0617 272 CDD RING_CH-C4HC3_MARCH 64 110 - -
Sto11g0617 272 Pfam Protein of unknown function (DUF3675) 115 231 IPR022143 -
Sto11g0617 272 SMART ringv_2 63 110 IPR011016 GO:0008270
Sto11g0617 272 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 269 IPR033275 -
Sto11g0617 272 PANTHER OS01G0121200 PROTEIN 1 269 - -
Sto11g0617 272 ProSiteProfiles Zinc finger RING-CH-type profile. 56 116 IPR011016 GO:0008270
Sto11g0617 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 119 IPR013083 -
Sto11g0617 272 Pfam RING-variant domain 64 109 IPR011016 GO:0008270
Sto11g0617 272 SUPERFAMILY RING/U-box 62 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0617 Sto-Chr11 7267370 7270132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0617 53 110 C3H Transcription Factor Family AT2G37950 45.902 2.34e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0617 - - gmx:100792304 408.683