Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0471 ATGCATGGTGGTGAAGCTGAATCATTATCATGCCTCCATACTCCATACCCTCATGTGTGCAATCACTACATGTCCACCAATACACTatcaacttcttcttcttcttcttcctctttctccttCCATGAAATGGCCCTTCAGGTCACCATGGACCAAGCCATTGAGGCTCACAAGCTTGTCTCCACCATGAGAATAATGGACAATAATGACTTCAATGGCGGCGACAACCGTGCCAAGTTAGCTTGGTCAGACTGCTTGGAGCTCTACGAAGATACAGTTTTTCAGTTGAACCGGTCGGTCAGTAAGTCAAAAAACCCTGACGATAGGCTCACGTGGCTCAGTGCCGCCACAGCCAACCATCAAACCTGCCAAAATGGGTTCCTTGACTTGAACCTCCAATCTCATCTCAACTACTTCCCAAACATGCTTGGAAACTTCTCCAAATTGCTTAGTAATTCCTTGGCCATTACTAAGGCCATGTCAATATCATCATCGTCATTCAAACgtgtcaataataataataataatggtggTGGGAGAAAGTTGTTAGGCAGTTATCCTGAGTGGGTTTTGGAGTCGGATCGGAAGTTGATAGAGGCAGCGCCTGGGACACCGGGGCCAGATGTGGTGGTGGCGAAGGACGGGAGTGGGAACTACAAGAGTATAGCGGAGGGGGTGGCCGCAGCAGCGAAGATGGGTGGCGGTGGAGGGAGGAGAGTGGTGGTGCATGTGAAGGGCGGTGTGTATGCAGAGAACGTAGAGATTAAAAGGACAATGAAGAATTTGATGATCGTTGGAGATGGGATTGGTGTTACCATTGTTACAGGCAGCAAAAGTGCTGCCCAAACCACCACTTTTTCTTCTGCTACATTTGCTGTTTCCGGCGACAACTTCATCGCCCGTGACATAACCTTCGAGAACACCGCCGGGCCGGCGAAGCACCAGGCGGTGGCTCTCCGCTGCGGCGCCGACCACGCGGTATTCCACCGCTGCAGCTTCCTTGGCTACCAAGACACCTTGTACGTCTACTCCCAGCGCCAATTCTACCGCGACTGCGACATCCACGGCACCGTCGACTTCATCTTTGGCGACGCGGCCGCCATCCTCCAGAACTGCAACATCAACGCCAGGAAGCCCATGGGCGGGCAACAGAACTCCGTGACAGCGCATGGGAGGTCCGACCCGAATGAGAACACGGGTATCATCATCCAAAACTGCCGGGTGACCGGGGCGCCCGGCACTAACAACTTCCTGGGGCGGCCATGGAGGGAGTACGCGAGGACGGTGGTGATGGCGAGCGAGCTCGGGGGCATCCATCCGGCAGGGTGGTTGGAGTGGAGCGGAAGCTTTGCCCTGAAGACTCTGTACTATGCGGAGTATATGAATACCGGAGGCGGTGCCGCGACCGGAGGGAGGGTGAAGTGGCCAGGGTTCCATGTGCTGAGGAGCCCGGCCGAGGTGAGCGAGTTCTCGGTGGGGAATTTCTTGGGCGGGGAGTCGTGGATCCCCGGCGCCAACGTGCCGTTCAACGCCGGGTTGTGA 1542 0.5318 MHGGEAESLSCLHTPYPHVCNHYMSTNTLSTSSSSSSSFSFHEMALQVTMDQAIEAHKLVSTMRIMDNNDFNGGDNRAKLAWSDCLELYEDTVFQLNRSVSKSKNPDDRLTWLSAATANHQTCQNGFLDLNLQSHLNYFPNMLGNFSKLLSNSLAITKAMSISSSSFKRVNNNNNNGGGRKLLGSYPEWVLESDRKLIEAAPGTPGPDVVVAKDGSGNYKSIAEGVAAAAKMGGGGGRRVVVHVKGGVYAENVEIKRTMKNLMIVGDGIGVTIVTGSKSAAQTTTFSSATFAVSGDNFIARDITFENTAGPAKHQAVALRCGADHAVFHRCSFLGYQDTLYVYSQRQFYRDCDIHGTVDFIFGDAAAILQNCNINARKPMGGQQNSVTAHGRSDPNENTGIIIQNCRVTGAPGTNNFLGRPWREYARTVVMASELGGIHPAGWLEWSGSFALKTLYYAEYMNTGGGAATGGRVKWPGFHVLRSPAEVSEFSVGNFLGGESWIPGANVPFNAGL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0471 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 8 161 IPR035513 -
Sto11g0471 513 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 160 IPR006501 GO:0004857
Sto11g0471 513 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
Sto11g0471 513 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 8 512 - -
Sto11g0471 513 Pfam Pectinesterase 208 498 IPR000070 GO:0030599|GO:0042545
Sto11g0471 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 10 160 IPR035513 -
Sto11g0471 513 SMART PMEI_2 2 156 IPR006501 GO:0004857
Sto11g0471 513 CDD PMEI-like_3 9 161 - -
Sto11g0471 513 Gene3D - 204 513 IPR012334 -
Sto11g0471 513 Pfam Plant invertase/pectin methylesterase inhibitor 10 156 IPR006501 GO:0004857
Sto11g0471 513 SUPERFAMILY Pectin lyase-like 204 511 IPR011050 -
Sto11g0471 513 PANTHER PECTINESTERASE 8 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0471 Sto-Chr11 5941253 5943760 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0471 10 513 Carbohydrate Esterase AT1G23200 52.471 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0471 - - lja:Lj4g3v3099630.1 612.068