Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0448 ATGGCGGATGCTGATGTTGGGACCGACGTCGCCGCAGGGCAGCCGAAGAAGAGAACGTTCAAGAAGTTCAGCTTCAGAGGCGTTGATTTGGACGCTCTTCTTGACATGTCCACCGATGAGCTTGTCAAGCTCTTCCATGCCCGAGCTCGCAGAAGGTTTCAGAGAGGTCTGAAGAGGAAGCCAATGGCTTTGATTAAGAAGCTGCGCAAGGCgAAAAGGGAGGCTCCAGCAGGCGAGAAGCCAGAACCAGTTCGCACCCATCTGCGTAACATGATCATCGTACCTGAGATGATTGGGAGCATAATTGGAGTGTACAATGGCAAGACATTCAACCAGGTTGAAATCAAACCTGAGATGATTGGCCATTACTTGGCAGAGTTCTCAATTTCATACAAACCCGTCAAGCACGGTAGACCCGGTATTGGTGCCACCCACTCTTCAAGGTTTATTCCTCTCAAGTGA 462 0.5022 MADADVGTDVAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0448 153 TIGRFAM uS19_arch: ribosomal protein uS19 20 153 IPR005713 GO:0003735|GO:0006412|GO:0015935
Sto11g0448 153 SUPERFAMILY Ribosomal protein S19 57 137 IPR023575 GO:0003735|GO:0005840|GO:0006412
Sto11g0448 153 ProSitePatterns Ribosomal protein S19 signature. 106 130 IPR020934 GO:0003723
Sto11g0448 153 Gene3D 30s Ribosomal Protein S19; Chain A 10 153 IPR023575 GO:0003735|GO:0005840|GO:0006412
Sto11g0448 153 PRINTS Ribosomal protein S19 family signature 86 105 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sto11g0448 153 PRINTS Ribosomal protein S19 family signature 106 118 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sto11g0448 153 PRINTS Ribosomal protein S19 family signature 118 133 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sto11g0448 153 Hamap 30S ribosomal protein S19 [rpsS]. 49 142 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sto11g0448 153 Pfam Ribosomal protein S19 51 136 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sto11g0448 153 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 10 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sto11g0448 153 PANTHER LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15 3 153 - -
Sto11g0448 153 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 3 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0448 Sto-Chr11 5677154 5678741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0448 1 153 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.928 1.20e-92 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0448 K02958 - nnu:104612419 293.893