Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0438 ATGTCATCAGAGAATTCTCCCACGGCGGCGGTTGAGCCCCACGCGCCGCTCCTTCGTTCGCGCCAGGGAACCTCCTCCGATGCCGCCCGGACTCCCACCCTCGCGCTTCTTCTGGGTCGCGCCGGCCGACGCGGTCCGTCCATGTTGGTCCGGGAGACGGCGGCTCGCGAGCTGGAGGAGCGGCGGGCCGATTGGGGCTATTCGAAGCCGGTGGTGGCGCTGGACATGACGTGGAACATGGCCTTCGTGGTTGTGTCGGTGGTGATGCTGTTCTTGACGCTGGATGAGAGGCCTAACACGCCGATCCGGGTGTGGATCTGCGGGTACGCGGCGCAGTGCTTGGTTCATGTGGTGCTTGTGTGGCTCGAGTATAGGAGGAGGAATATGAGGGTTTCGCGGAGGCGGAGGGGTCAGGATGCGGATAGTGAAGCTGGTAATTTTGAGGATGTTAACGACAGTGAGGACGAGGATAGTGGAGATGGCAGCTCATTGAATTCGTCTCGTCCTGGATTCACTAAACGATGTGAATCGGTGAATACCATGGTCTCATTCCTTTGGTGGATAGTTGGCTTTTATTGGGTGGTTTCTGGTGGTGATATCCTTTTGCAAGATGCACCGCGTTTATATTGGTTAGCTGTTGTTTTTCTGGCGTTTGATGTATTCTTTGCCATCTTCTGTGTTGTTTTGGCATGTTTGATTGGCATTGCCCTCTGTTGTTGTTTGCCATGCATCATTGCTATTCTCTATGCTGTTGCTGGCCAGGAAGGTGCATCTGAAGCAGATCTCAGTATGCTTCCAAAATACAGATTTCGCATGTTAAGCAATGAGGAAAAGTCGAGTGGGGGAGCAGGAACAATGGTTCCTGTGGAAACGAGCAGTGGGTACTTGGCAAATGACCGAATGCTTTTACCTGAGGATGCGGAATGCTGTATATGTCTCACTTCATATGAGGATGGAACAGAACTCCATGCTCTACCCTGCAACCATCATTTTCATTCTACATGCATTGTGAAATGGTTGAAAATGAATGCAACTTGTCCTCTCTGCAAGTACAATATTCTCAAGGGAAATGAACAGGTGTGA 1083 0.518 MSSENSPTAAVEPHAPLLRSRQGTSSDAARTPTLALLLGRAGRRGPSMLVRETAARELEERRADWGYSKPVVALDMTWNMAFVVVSVVMLFLTLDERPNTPIRVWICGYAAQCLVHVVLVWLEYRRRNMRVSRRRRGQDADSEAGNFEDVNDSEDEDSGDGSSLNSSRPGFTKRCESVNTMVSFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPKYRFRMLSNEEKSSGGAGTMVPVETSSGYLANDRMLLPEDAECCICLTSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0438 360 MobiDBLite consensus disorder prediction 145 159 - -
Sto11g0438 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 358 IPR013083 -
Sto11g0438 360 Pfam Ring finger domain 308 350 IPR001841 -
Sto11g0438 360 MobiDBLite consensus disorder prediction 135 169 - -
Sto11g0438 360 PANTHER TARGET OF ERK KINASE MPK-1 9 360 - -
Sto11g0438 360 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Sto11g0438 360 SMART ring_2 309 349 IPR001841 -
Sto11g0438 360 CDD RING-H2_RNF111_like 308 352 - -
Sto11g0438 360 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 360 - -
Sto11g0438 360 SUPERFAMILY RING/U-box 299 354 - -
Sto11g0438 360 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0438 Sto-Chr11 5561995 5568119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0438 1 359 C3H Transcription Factor Family AT1G68070 70.000 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0438 - K13148 aip:107643865 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0438 11 5561995 5568119 Sto11g0438 11 5561995 5568119 ECH