Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0417 ATGACGAATCAGAACAGTTGCGATGACATGCTTATCGATCGATGTGAACCAGAAGCTCCTAAGCAAAAACAAGGGGCTTCTCTTCCTAATGAGTTCAATTCGCATTACCTTAAAGTGTATTACGgaAGGCTGTTTCCATATGCTGATATTTTTAGATGGATTTCTTACGGCAACGATGGGAAGCATCCGGCTTGTGATTCTTCATATGTCAGCCGTAGGGAATTTTCATTCACACTTGACAACGATATATATCTGCGCTTCTTATCTTTCAACAGTGCAGCAGAACTTGAAAGCAAAATCAAAGAGAAGTGTCCATTTAAGATTGATATTGGACCTGTGTATAGTGTGGATCCTACAAAAAGGAACGCCTATGCTCAGAGTGGCGATAATGTTTTCGCTCCAGTTGAGAGGGAGCTAATTTTTGATATAGATATGACAGATTATGATGACGTAAGATACTGCTGCTCTGGTGCTGATGTTTGCTTGAATTGCTGGCCATTGATGACTATAGCTATCAAAGTGATTGATTTTGCCTTAAGGGATGATTTTGGCTTTAAGCACATTCTGTGGGTCTATAGTGGCCGACGTGGTGTTCATTGTTGGGTCTGTGATGGGAAAGCAAGAAGATTGACTAATGAGCAGAGAGCTGCTATTGCTGACTATTTTCGTGTCTACAAGGGAAATGAAAATAGTTCTAAAAAGGTTTCTCTGACGGGCCATGCTCTTCATCCTTTCCTGGCAACAGCATACACTAAAGTTCTTAAAgaattttttgagaaaaaacTTTTAGTAAGTCAAAGTTTACTTTCTACTGAAGAGAGATATGAGAAGATCCTAGAGATGATTCCTGATGCAGCTATTACTTCTGAACTTAGGGGCAGGTGGCAAGAAAATAGGCGGTCTTctagtatgaaagaagacattAATGTTGTTCGATGGGAACAGCTCAAACAGTTGCTGCAATCAGGAAAGCATAAGTTATCATTAATGCTTACCTATTCTTCTTTGCACGCACAAGGACTGCGAAGGTGTGTTGAAGAGATTGTTTTCTGTTTTGCTTATCCTAGGCTAGACATGGAGGTTTCAAAGCATATGAATCATTTGCTTAAAGCGCCATTCTGTGTACACCCAAAAACAGGCCGTGTTTGTGTCCCTATTGATCCAAATCAATGTGAGCAGTTTGATCCTACCACAGTACCGACCCTTTCACAGCTTTTAGATGAGCTTAACGAAAGAGGTTTGAGAGATGATGTTGATGGTGAATGGAAGGGAACTTCATTTGGAAATGCTGTTAGCCTTTTCAGATCGTCATTCTTACAGCCTCTACTAAAAGCCAGCAAGGACTCTTAG 1350 0.3963 MTNQNSCDDMLIDRCEPEAPKQKQGASLPNEFNSHYLKVYYGRLFPYADIFRWISYGNDGKHPACDSSYVSRREFSFTLDNDIYLRFLSFNSAAELESKIKEKCPFKIDIGPVYSVDPTKRNAYAQSGDNVFAPVERELIFDIDMTDYDDVRYCCSGADVCLNCWPLMTIAIKVIDFALRDDFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRAAIADYFRVYKGNENSSKKVSLTGHALHPFLATAYTKVLKEFFEKKLLVSQSLLSTEERYEKILEMIPDAAITSELRGRWQENRRSSSMKEDINVVRWEQLKQLLQSGKHKLSLMLTYSSLHAQGLRRCVEEIVFCFAYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNQCEQFDPTTVPTLSQLLDELNERGLRDDVDGEWKGTSFGNAVSLFRSSFLQPLLKASKDS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0417 449 SUPERFAMILY Prim-pol domain 33 411 - -
Sto11g0417 449 CDD AE_Prim_S 46 396 IPR014052 GO:0003896|GO:0006269
Sto11g0417 449 PANTHER DNA PRIMASE SMALL SUBUNIT 43 448 IPR014052 GO:0003896|GO:0006269
Sto11g0417 449 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 38 408 IPR014052 GO:0003896|GO:0006269
Sto11g0417 449 Gene3D DNA primase, PRIM domain 24 448 - -
Sto11g0417 449 Pfam DNA primase small subunit 141 387 IPR002755 GO:0003896|GO:0006269
Sto11g0417 449 PANTHER DNA PRIMASE 43 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0417 Sto-Chr11 5375216 5379742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0417 3 448 Core DNA Replication Machinery Family AT5G41880 63.311 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0417 K02684 - jre:108987131 707.597