LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto11g0355	ATGGAGAAACCCCATGGGAGTTTTGGGGTTTCGTTCTCATACCGTCTTCTTTTGATTCTTTCTATCATGATCGTCTTGGCTCAGTCTCAAGACGcggatgttatgaacattttaAGGGACGCAATCAACGGCTCAACCTCTCTTCCCCAATGGTCCGACTCGGATTTCTGCAAATGGAGCCACGTTCGTTGCAATTCCGCGAAACGGGTCGTCTCAATTCAGATTGGGAATCTGAACCTCAAAGGCTCACTCCCGAAGGAACTCTCGAAACTCACGGAGTTACGGCGCTTCGAGTGCCAATCAAACGGTCTCACAGGGGCATTTCCGTCATTACCCACTTCCCTCCAGAACCTCATCATCTACCACAATGGCTTCACCTCCATACCCCAAGATTTCTTCAAAGGCATGTCCAATTTACAAAAGGTGAGAATCGACTTCAACCCTTTTCCTCGGTGGAACGTTACCGAAACTCTCAGAGACTGCGTGGCGATCCAGACATTCTCGGCGGATAAAGCCAGTTTCTTCGGAGAAATTCCCGATTTCTTCGGCGCATTCCCAGGTTTGACCACTTTGTCCCTGCGCTTCAACCAATTCGTCGGTGGGTTGCCTTCCGGCTTGTCGGGTAGTTCAATAGAGTATCTATGGGTGAATGGGCAGGAGATTAAGCTTAATGGTACACTTGCGGTTTTACAGAACATGACCTCTCTGAAACTAATTTGGGTTAATGGGAATGCGTTTTCTGGTCCTATCCCTGATTTGTCCAATCATGATCAGCTATTTGATGTGAATCTAAGGGATAATCAATTGACCGGTGTTGTTCCATTGTCTCTTATGGCTCTTCCTAGTTTACAAGTAGtgaatttaaccaataatttgCTTCAAGGACCCACTCCTAAGTTTAAAACAGGAGTGAGTGTGGATATGATTGAAGGGACAAATCAGTTTTGTAGAAATGAAACTGGTCAGCCATGTAGTTCTATGGTGAATGCTTTGTTGTCTGTGGCTGAACCTCTAGGGTATCCCTTGAAGTTTGCTCAGAGTTGGAAGGGCAATGATCCCTGCGGTGGTAGTACTTGGTTAGGGATTGTTTGCGCCGGGGGAAACATTTTGGCTGTGAATTTTCAGAACATGGGTTTGTCTGGTACAATTTCTCCTAGTTTGGCCAGCCTCACATCTGTAAGAAGATTGCTTCTTGATAATAATAATCTCACCGGTACTATACCAAGTGAGCTTACTAGTATGCCTCTTTTGCAAGAGCTGGATGTTTCTAATAATCGTTTATACGGCAAGGTACCGGCTTTTCGGAAGGATGTGGCTCTTAAACTTGGTGGGAATCCTGATATTGGAAAGGATAAACCTTCTGCTCCACTCAGTGCGCCTGACTCGGATTCTGGAGGTAATGGTAAGAAAAATAATTCTGCAGTCATTGTTGTGGTTGTGGTGGTTATTGTGGTATTACTTGGAGTGGCAATTTGGGGATTCATTTGGTTTAACAGAAAATGTAAGCATTCAGGCAAGTCGCAAGGTCCAACTCCAATTTTGGTGGAAGCTGGTAATATGGCAATTCCATTACAAGTTTTGAGAGGAGTCACTAACAATTTTTGCGAAGAGAACATTCTGGGGAGAGGTGGATTCAGCACTGTGTACAGAGGGGAATCGCATGACGGGACCAAGATAGCAGTGAAAAGAATGGAATCCGGAATGAGGGGCGAGAAGGGGCTGCGTGAGTTCGAGGCTGAAATCGCCGTACTCACCAAGGCTCGGCACAAGCACTTGGTTGCGCTTCAAGGGTATTGCTTGGATGCAAACGAGAGGCTTCTAGTGTACGAGTACATGCCTCAAGGGACTCTTAGTAGACATTTGTTCAGCTGGAAAGACGAAGAAGGGTTAAAGCCTCTGGAATGGACAAGAAGGCTTACCATTGCCTTGGATGTTGCTAGAGGGGTTGAATATCTTCATGGTTTGGCGCAGCGAAATTTCATTCATAGGGATCTCAAGCCATCAAATATTCTGCTCGGAGATGATATGCGAGCCAAAGTGTCGGACTTTGGATTGGTTCGGCTTGTTCCAGAAGATAAAACATCCATTGAAACTAGAGTTGCTGGAACTTTTGGATATCTTGCACCAGAGTATGCAGCAACCGGACGAGTTACAACCAAGGTCGACGTGTATAGCTTCGGAGTGATTCTCATGGAGATGGTAACCGGGAGGAGGGCACTTGATAACAGCCAACCGGAAGAGAACATCCATCTCGTTACATGGTTCCGAAGAATGCTAATAAACAACAAGGACGACGCCTTCCAGGAGGCGATGATCGACCCGACGATTGAAGTCAGTGATCAAGAAACTCGATCCAGTCTTAGCATCGTCGCGGAGTTGGCAGGCCACTGCTGCGCGAGTGAACCCTACCAGCGGCCGGACATGGGGCATGCGGTGAATGTGCTAGCACCTCTTGTTGAGAATTGGAAACCTGCGGAAGAAAATTCAAATGACACTATAAGTGGAATTCACCTAGAAATGAGCTTAACCTTACCACgagaataa	2544	0.4572	MEKPHGSFGVSFSYRLLLILSIMIVLAQSQDADVMNILRDAINGSTSLPQWSDSDFCKWSHVRCNSAKRVVSIQIGNLNLKGSLPKELSKLTELRRFECQSNGLTGAFPSLPTSLQNLIIYHNGFTSIPQDFFKGMSNLQKVRIDFNPFPRWNVTETLRDCVAIQTFSADKASFFGEIPDFFGAFPGLTTLSLRFNQFVGGLPSGLSGSSIEYLWVNGQEIKLNGTLAVLQNMTSLKLIWVNGNAFSGPIPDLSNHDQLFDVNLRDNQLTGVVPLSLMALPSLQVVNLTNNLLQGPTPKFKTGVSVDMIEGTNQFCRNETGQPCSSMVNALLSVAEPLGYPLKFAQSWKGNDPCGGSTWLGIVCAGGNILAVNFQNMGLSGTISPSLASLTSVRRLLLDNNNLTGTIPSELTSMPLLQELDVSNNRLYGKVPAFRKDVALKLGGNPDIGKDKPSAPLSAPDSDSGGNGKKNNSAVIVVVVVVIVVLLGVAIWGFIWFNRKCKHSGKSQGPTPILVEAGNMAIPLQVLRGVTNNFCEENILGRGGFSTVYRGESHDGTKIAVKRMESGMRGEKGLREFEAEIAVLTKARHKHLVALQGYCLDANERLLVYEYMPQGTLSRHLFSWKDEEGLKPLEWTRRLTIALDVARGVEYLHGLAQRNFIHRDLKPSNILLGDDMRAKVSDFGLVRLVPEDKTSIETRVAGTFGYLAPEYAATGRVTTKVDVYSFGVILMEMVTGRRALDNSQPEENIHLVTWFRRMLINNKDDAFQEAMIDPTIEVSDQETRSSLSIVAELAGHCCASEPYQRPDMGHAVNVLAPLVENWKPAEENSNDTISGIHLEMSLTLPRE	847

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto11g0355	847	ProSiteProfiles	Protein kinase domain profile.	534	819	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto11g0355	847	SMART	serkin_6	534	819	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto11g0355	847	Pfam	Leucine rich repeat N-terminal domain	30	65	IPR013210	-
	Sto11g0355	847	Pfam	Leucine rich repeat N-terminal domain	329	364	IPR013210	-
	Sto11g0355	847	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	660	672	IPR008271	GO:0004672\|GO:0006468
	Sto11g0355	847	PANTHER	OSJNBA0070M12.3 PROTEIN	515	842	-	-
	Sto11g0355	847	PANTHER	OSJNBA0070M12.3 PROTEIN	9	515	-	-
	Sto11g0355	847	Pfam	Protein kinase domain	536	813	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto11g0355	847	MobiDBLite	consensus disorder prediction	445	468	-	-
	Sto11g0355	847	Gene3D	Phosphorylase Kinase; domain 1	498	611	-	-
	Sto11g0355	847	Gene3D	Ribonuclease Inhibitor	28	323	IPR032675	-
	Sto11g0355	847	Gene3D	Ribonuclease Inhibitor	326	452	IPR032675	-
	Sto11g0355	847	SUPERFAMILY	Protein kinase-like (PK-like)	512	824	IPR011009	-
	Sto11g0355	847	ProSitePatterns	Protein kinases ATP-binding region signature.	540	562	IPR017441	GO:0005524
	Sto11g0355	847	Gene3D	Transferase(Phosphotransferase) domain 1	612	839	-	-
	Sto11g0355	847	CDD	STKc_IRAK	540	818	-	-
	Sto11g0355	847	SUPERFAMILY	L domain-like	37	434	-	-
	Sto11g0355	847	PANTHER	TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED	515	842	-	-
	Sto11g0355	847	PANTHER	TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED	9	515	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto11g0355	Sto-Chr11	4624734	4627578	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto11g0355	70	820	Receptor kinase-like Gene Family	AT5G07280	30.929	2.35e-81	283

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IX	Sto11g0355		Pkinase	3.4e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto11g0355	-		K00924	gmx:100776064	1042.72