Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0308 ATGGGAGTGGTAACGATGAATACGGATGCCGGTACCTTGCCGAAGGGTGGAGGGGTAATCGGTGGGCTGGTTCGTGATGGGGAGGGGGTTTGTTTGGCCGCATTCACGAAGAAGAGGGAAGAAACTAACAATCCGATGGTTCTTGAGGCGGAAGCAATAAGAAGAGGCATGGAAGTGGCGCTGCAACTTGGGCCACCAAACAACaccaaattatttttgaaagctATGGAAGGTGGAGAAGGTCCTTCATTTCCCTTTGGCCAGCACCAATATGAAAACCCTGCAGATGTTGATGCAACCAACACCAGAATTAACGAGGAGCAACTTGCAGCTCCTCACGCAGTAGTGCGAGAGCTAATCCATTATATTCCTCTCGCTAACTTGACTAGAATTATGAGGCAGATTCTTCCGCAAAACATCAGAATCTCCGAGGATGCCAAATGGGCTCTCCAAGTTTGTGTCTCGGTGTTTATTCGCTTCCTCTCTAATAAGGCTAATGAACGGTGTCAACATGACTGTTACATAACAGTGACACCAGATGACATGCTTTGGACAGTTAGGAATCTAGGCTTCAATGACTATGTGGAGCATCTTATCACCTTTCTCAGCCGCCTCTGTGATGTCGAAGATTTCAACATCTTTCCGGCGGTGATCCCTGCAACTCAAAACCAAGATGTTGATCCAACCAACACTGGCATCAACGAGGAGTAA 711 0.4655 MGVVTMNTDAGTLPKGGGVIGGLVRDGEGVCLAAFTKKREETNNPMVLEAEAIRRGMEVALQLGPPNNTKLFLKAMEGGEGPSFPFGQHQYENPADVDATNTRINEEQLAAPHAVVRELIHYIPLANLTRIMRQILPQNIRISEDAKWALQVCVSVFIRFLSNKANERCQHDCYITVTPDDMLWTVRNLGFNDYVEHLITFLSRLCDVEDFNIFPAVIPATQNQDVDPTNTGINEE 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0308 236 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 123 186 IPR003958 -
Sto11g0308 236 Gene3D Histone, subunit A 117 209 IPR009072 GO:0046982
Sto11g0308 236 CDD RNase_H_like 7 64 IPR044730 -
Sto11g0308 236 Pfam Reverse transcriptase-like 15 64 IPR002156 GO:0003676|GO:0004523
Sto11g0308 236 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 97 205 - -
Sto11g0308 236 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 97 205 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sto11g0308 236 SUPERFAMILY Histone-fold 122 205 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0308 Sto-Chr11 4039397 4049313 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0308 98 209 CCAAT-HAP3 Transcription Factor Family AT1G21970 42.857 4.94e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sto11g0308 CBFD_NFYB_HMF 3.8e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0308 K08065 - egt:105972141 107.457