Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0304 ATGCAAGAGCCAATCCATTACGTTCCTCTCGCAAACTTGACTAGAATTATGAGGCAGATTCTTCCAGAAAACACCAGAATCTCTGAGGATGCAAAACAGACTCTCCAAGTTTGTGTCTCGGCATTTATTCGCTTTCTCACTAATAAGGCTAAAGAACGGTGTCAACAAGACTGTCGCGTAACGATAACACCAGAGGACATCCTTTGGGCAGGTAAAAATCTAGGCTTTAACGACTATGTCGAGCCTCTTACCATCTTTCTCAGTCGCCTCCGTGATGTCGAAGATTTCAACATCTTGCCGGTGGTGATCCCTGCAACTCAAAACCAAGATGTTGATCCAACCAACACCGGCATCAACGAGGAGCAACCAATTCCTCACGTAGCAATGCGAGAGCCAATCCATTATGTTCCTCTCGCAAACTTGACTAGAATTATGAGGCAGATTCTTCCAGAAAACACCAGAATCTCTGAGGATGCCAAACAGACTCTCCAAGTTAGTGTCTCGGCGTTTATTCGCTTTCTCACTAGTAAGGCTAAAGAACGGTGTCAACAAGACTGTCGCGTAACGATAACACCAGAGGACATGCTTTGGGCAGTTAGAAATCTAGGCTTTAACGACTTTGTCGAGCCTCTTACCATCTTTCTTAGTCGCCTCCGTGATGTCGAAGGTGAACATTATAGCGCATAA 687 0.4512 MQEPIHYVPLANLTRIMRQILPENTRISEDAKQTLQVCVSAFIRFLTNKAKERCQQDCRVTITPEDILWAGKNLGFNDYVEPLTIFLSRLRDVEDFNILPVVIPATQNQDVDPTNTGINEEQPIPHVAMREPIHYVPLANLTRIMRQILPENTRISEDAKQTLQVSVSAFIRFLTSKAKERCQQDCRVTITPEDMLWAVRNLGFNDFVEPLTIFLSRLRDVEGEHYSA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0304 228 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 70 IPR003958 -
Sto11g0304 228 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 136 199 IPR003958 -
Sto11g0304 228 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 114 224 - -
Sto11g0304 228 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 3 95 - -
Sto11g0304 228 PRINTS CCAAT-binding transcription factor subunit A signature 35 53 - -
Sto11g0304 228 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Sto11g0304 228 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Sto11g0304 228 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 114 224 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sto11g0304 228 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 95 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sto11g0304 228 SUPERFAMILY Histone-fold 136 223 IPR009072 GO:0046982
Sto11g0304 228 Gene3D Histone, subunit A 126 227 IPR009072 GO:0046982
Sto11g0304 228 Gene3D Histone, subunit A 2 123 IPR009072 GO:0046982
Sto11g0304 228 SUPERFAMILY Histone-fold 8 97 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0304 Sto-Chr11 3976945 3981858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0304 7 94 CCAAT-HAP3 Transcription Factor Family AT1G21970 56.818 3.18e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sto11g0304 CBFD_NFYB_HMF 8.4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0304 K08065 - thj:104811667 126.331