Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0242 ATGGCGGGTGGAAAATCATCCAGGTCAAATCCATCACAGGCTAGGAAGAGAGTTGATGCTGTTGATTCTCGTGCTGCATCTGGTCTTGTTCGCGCCAAGGATGGCAGTGCTTTTGCGAAATGTGAAGAATGTAACAAGAATGTTCCAGTGGCACTCATTAGCATGCACAGTTGCAGCCTTGAggctaaaattaaaatgaatctgGAGGCTCAGGTTGTGGAGAAGTCTGAAGTCAAGAAGCCAGCGGATAGGAAAAAGCCTAAAACTAAAGAACCTAAGGCAAAAAGGGCCAAGGTGGAGAAGGCAGAGAAGGGGAAGAAGAGCAAGGATCCTAATAGGCCCAAGCGTCCTGCTACAGCCTTTTTTGTCTTCCTGGAGGAGTTTAGAAAAATTTTTAAGGAAGCAAATCCTGATTCAAAGGATGTCAAAAGGGTTACTAAAGAGGCAGGTGAGAAGTGGAAGTCTTTGTCTGATGAAGAGAAGAAACCTTACTTGGATAAAGTTGCTGAACTCAAAGCAGAATATGAGAAGGCATTAGAAAGTTATAATGCTGCAGAAGATGGAGATGATCAAGATGGGTCTGAGAAGGAAGACGCAGCAGAGGAAGTAGGCGAAGAGGGGTCTGATAAGGATGACACCGCAAAGGAAGTGGAAGAGATCACTGATGAGGAGTAG 675 0.44 MAGGKSSRSNPSQARKRVDAVDSRAASGLVRAKDGSAFAKCEECNKNVPVALISMHSCSLEAKIKMNLEAQVVEKSEVKKPADRKKPKTKEPKAKRAKVEKAEKGKKSKDPNRPKRPATAFFVFLEEFRKIFKEANPDSKDVKRVTKEAGEKWKSLSDEEKKPYLDKVAELKAEYEKALESYNAAEDGDDQDGSEKEDAAEEVGEEGSDKDDTAKEVEEITDEE 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0242 224 MobiDBLite consensus disorder prediction 70 117 - -
Sto11g0242 224 MobiDBLite consensus disorder prediction 1 25 - -
Sto11g0242 224 Pfam HMG (high mobility group) box 114 183 IPR009071 -
Sto11g0242 224 MobiDBLite consensus disorder prediction 70 114 - -
Sto11g0242 224 MobiDBLite consensus disorder prediction 179 224 - -
Sto11g0242 224 SMART hmgende2 113 184 IPR009071 -
Sto11g0242 224 MobiDBLite consensus disorder prediction 139 160 - -
Sto11g0242 224 Gene3D High mobility group box domain 97 199 IPR036910 -
Sto11g0242 224 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 114 183 IPR009071 -
Sto11g0242 224 CDD HMGB-UBF_HMG-box 114 180 - -
Sto11g0242 224 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 1 204 - -
Sto11g0242 224 Coils Coil 165 188 - -
Sto11g0242 224 MobiDBLite consensus disorder prediction 185 207 - -
Sto11g0242 224 SUPERFAMILY HMG-box 105 184 IPR036910 -
Sto11g0242 224 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0242 Sto-Chr11 3200347 3202013 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Sto11g0242 HMG_box 2.1e-20 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0242 K25507 - gmx:100306558 254.218