Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0236 ATGCCTGACCATGCGGACAATGTTCGAGATTTCATCAACTCAACTTGGAGAGTTTGTTCCCTTCTAGGCAGCTGGGTTTCCAGCTTAATATTAAAACCTTACAGAGACATActtgaattaatatttaataattctcTTTCTTGTTTGGCCAAGGAAAGAGATAATTATTCAGATTTCATGGCTCAgggagactatatatatattagctcaGATGATGATGACCTGGATCTGGAGGAGATAGAAACCCCAAATTATAGGAACCTTCCAAGCTGGGCTACTGGTGGAAGTAATGCTGGTAATGGAGGAGGGCCTAAGCAGGATAGGTCTTCTAAACGAGAAAATACTTCAAATGCAAGCTCTTCTAGTATGTATAATCATTCACAAGTCAAGCAATTTACTCAACCTGGGTCCAGCAACAATGTGCTGAATCATAGAGTTGCACGAGGAAATGAATCTTTCAGTCTTTCAGAGAATGGAAACAGAAGTCAGCATCAGACACAAGATTTGAAGAGGACCCTTCCGTCATCTCTTAGGCCATCTGCAACAAGacctgttccttctcttccgTCATTTACACAAGAGACTAGATTAAACAACTTAAAAGATAACATGCCCAGAAGTCAGATTTATGATACTCATGGTAATCGTAACAATATAGTAGGACCTAGCACGAATAGTGACAAGGGCTATATGCATGATAGTTATGGCAGGGGTAATGATGAACGTGTCATGCATCAAAATGGTGGGATTAGGATTCTTCCTCCAACTTTGATGCATGGAAAGGCCATCTCTGGTGCACAGTTAGGTGGTTCAAGTGAATCTTCATACCGTTTTGGGGCAATTGAAGAAAGGACTTCTGAAAATGATGAGAGGTTAATTTATCAAGCAGCATTGGAGGATCTCAATCAGCCAAAAGTTGAAGCCACTTTACCCGATGGTCTATTGTCTGTGTCACTTCTGAGACATCAGAAAATTGCACTGGCTTGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCTTGGGGGGAATTCTAGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTTCCCTTATACAAATGCAAAGGTCATTGCAGTCAAAATCAAAAACAGATGAGACGTGCAATCATAAAGCTGAAGCACTGAATttggatgaagatgatgataatggCAGCGGTAATGTGGAAAAACCTAAAAAGAATGAATATGATGATATAAAGCCTATTCCGGAATCTGTTGGTTCTACTTCATCACGGGTGCTTAATAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCCGCTAGTGTTCTCCGACAGTGGGCAAGGGAACTCGATGACAAAGTTGGAGACGAAGCTAAGCTTTCTGTGTTGATTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTTGTTCTTACAACATATTCTCTTGTGACTAATGAAGTTCCAAAGCAACCTTTAATTGAAGAGGATgaaatagatgaaaaaaatgggGAAAAATTTGGGTTATCCTCTGAGTTTGCTTTtggtaaaaagaggaaaaagacGAATGATGCAACTAAAAAGGGCAAAAAGGGTAAGAAGGGAATTGATAGTTCTTTTGACAGCTCTTCTGGTCCTCTTGCAAGAGTTGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAGACAATAAAGAATCATAGAACTCAGGTCGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGACGGTGGTGCTTATCTGGAACACCTATTCAAAATACTATTGATGATTTGTATAGCTACTTCAGATTCCTGAAATATGATCCTTATGCTGTATATAAATCCTTCTACAATACAATAAAAGTTCCAATATCCAAAAATTCTATCCAGGGTTACAAGAAGCTTCAAGCAGTTCTGAGGGCTATAATGCTACGGCGTACAAAAGGTACATTGATTGATGGGGAGCCTATAATCAATTTGCCTCCTAAAACAATTGAGCTGAATAAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGCACTCAATTTAAGGCATATGCTGCTGCTGGTACATTGAATCAAAACTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGCCAGGCTTGCGATCACCCACTACTTGTTAAAGATCATGTTTCGGATTTTGTTGGTGAAAATTCTGTAGAAATGGCAAAAAACCTTCCAAAGGAGATGCTGATTAATCTCTTTAACCTTTTGGAAACATCCTTTGCAATATGTGGTGTTTGCAATGATACACCTGAAGATCCAGTTGTTACTATGTGTGGCCATGTTTTCTGTTATCAGTGTGTATCAGAATATTTGACAGGTTATGATAATATGTGCCCAGCAGTGGATTGTAAAGAACAAATTGGTGATGATGTTGTTTTCTCCAAGGCTACTCTAAGAAGTTGCATCTCTGGTGATCTTGGTGCTGGTAGTTCATCAAATTCTCATCTTGTTGATTATTCAGTAGTACAGCAGAATTGCCATTCTGATGTTAATGTCAGAAAACACAGAAGAAATTATTCAGAATGCACAACTGAGGGACCGATAAAGGCTATTGTTTTTTCCCAGTGGACTAGTATGTTGGATTTAGTCGAAGAATCACTGAACAAGACTTGTATTCAGTTCAGGAGACTCGATGGCACCATGACTCTGCTTGCAAGGGATAAAGCTGTTAAGGAATTCAATACTGATCCTGAGGTAACTGTGATGCTGATGTCATTAAAAGCTGGAAACCTTGGTTTGAACATGGTAGCTGCATGTCATGTTATACTTTTGGATCTTTGGTGGAATCCAACAACAGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAAACCCGTCCTGTTACTGTGACACGGCTCACTGTAAAGGATACAGTTGAAGATAGAATACTGGCACTCCAGgaagaaaagagaaagatggTAGCATCTGCTTTTGGTGAAGATCACGCCGGTAGCTCTGCAGCTCGCCTGACTGTGGACGATCTGAAATATCTTTTCATGGTCTAA 3075 0.3854 MPDHADNVRDFINSTWRVCSLLGSWVSSLILKPYRDILELIFNNSLSCLAKERDNYSDFMAQGDYIYISSDDDDLDLEEIETPNYRNLPSWATGGSNAGNGGGPKQDRSSKRENTSNASSSSMYNHSQVKQFTQPGSSNNVLNHRVARGNESFSLSENGNRSQHQTQDLKRTLPSSLRPSATRPVPSLPSFTQETRLNNLKDNMPRSQIYDTHGNRNNIVGPSTNSDKGYMHDSYGRGNDERVMHQNGGIRILPPTLMHGKAISGAQLGGSSESSYRFGAIEERTSENDERLIYQAALEDLNQPKVEATLPDGLLSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMISLIQMQRSLQSKSKTDETCNHKAEALNLDEDDDNGSGNVEKPKKNEYDDIKPIPESVGSTSSRVLNRKRPAAGTLVVCPASVLRQWARELDDKVGDEAKLSVLIYHGGNRTKDPVELAKYDVVLTTYSLVTNEVPKQPLIEEDEIDEKNGEKFGLSSEFAFGKKRKKTNDATKKGKKGKKGIDSSFDSSSGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGEPIINLPPKTIELNKVDFSIEERAFYTKLEADSRTQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLVKDHVSDFVGENSVEMAKNLPKEMLINLFNLLETSFAICGVCNDTPEDPVVTMCGHVFCYQCVSEYLTGYDNMCPAVDCKEQIGDDVVFSKATLRSCISGDLGAGSSSNSHLVDYSVVQQNCHSDVNVRKHRRNYSECTTEGPIKAIVFSQWTSMLDLVEESLNKTCIQFRRLDGTMTLLARDKAVKEFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRLTVKDTVEDRILALQEEKRKMVASAFGEDHAGSSAARLTVDDLKYLFMV 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0236 1024 Gene3D - 287 382 IPR038718 -
Sto11g0236 1024 MobiDBLite consensus disorder prediction 86 104 - -
Sto11g0236 1024 Gene3D - 415 504 IPR038718 -
Sto11g0236 1024 ProSitePatterns Zinc finger RING-type signature. 780 789 IPR017907 -
Sto11g0236 1024 MobiDBLite consensus disorder prediction 382 409 - -
Sto11g0236 1024 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 107 1023 - -
Sto11g0236 1024 CDD SF2_C_SNF 867 976 - -
Sto11g0236 1024 SMART ultradead3 315 628 IPR014001 -
Sto11g0236 1024 Gene3D - 664 1023 IPR027417 -
Sto11g0236 1024 SMART ring_2 765 803 IPR001841 -
Sto11g0236 1024 SMART helicmild6 883 966 IPR001650 -
Sto11g0236 1024 ProSiteProfiles Zinc finger RING-type profile. 765 801 IPR001841 -
Sto11g0236 1024 MobiDBLite consensus disorder prediction 524 546 - -
Sto11g0236 1024 SUPERFAMILY RING/U-box 761 802 - -
Sto11g0236 1024 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 334 611 IPR014001 -
Sto11g0236 1024 Pfam SNF2-related domain 322 726 IPR000330 GO:0005524|GO:0140658
Sto11g0236 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 1023 IPR027417 -
Sto11g0236 1024 Pfam Zinc finger, C3HC4 type (RING finger) 765 801 - -
Sto11g0236 1024 Pfam Helicase conserved C-terminal domain 868 966 IPR001650 -
Sto11g0236 1024 Gene3D - 521 660 IPR038718 -
Sto11g0236 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 757 815 IPR013083 -
Sto11g0236 1024 MobiDBLite consensus disorder prediction 86 238 - -
Sto11g0236 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 649 IPR027417 -
Sto11g0236 1024 MobiDBLite consensus disorder prediction 382 422 - -
Sto11g0236 1024 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 856 1019 IPR001650 -
Sto11g0236 1024 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 107 1023 - -
Sto11g0236 1024 CDD DEXDc_SHPRH-like 319 649 - -
Sto11g0236 1024 MobiDBLite consensus disorder prediction 113 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0236 Sto-Chr11 3098322 3118064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0236 228 924 RAD5 or RAD16-like Gene Family AT1G50410 62.101 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto11g0236 SNF2_N 3.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0236 - - gmx:100795142 1362.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0236 11 3098322 3118064 Sto11g0236 11 3098322 3118064 ECH