Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0224 ATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCATGGGAGGAATTCTTGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGGTCATTGCAGTCCAAATCAAAAACAGATGACAACTGCAATCATAAAACTGAAGCATTGAATTTGGATGAGGATGATGACAATGGTGGTGATAAAGTGGAAAAATCTAAAGATAATGAAGAATCTGATGATATAAAACCTACTCTGGAATCGGTTAGTTCTACTTCGACTAGTACACTGGTTGTCTGCCCTGCTAGTGTTCTCCGACAGTGGGCAAGGGAACTCGATGACAAAGTTGGAGATGAAGCTAAGCTTTCTGTGTTGGTTTATCATGGGGGTACTAGGACAAAGGATCCTGTTGAACTAGCAAAATATGATGTTGTTCTCACAACATACTCTATTGTGACTAACGAAGTTCCAAAGCAACCTTTAGTTGAAGAGGatgaaattgatgaaaaaaatgtGGAAAAATTTGGGAGTAGAAAGAGCAAAAAGGGTAAAAGGGGAACTGATAGTTCATTTGATTGTGCTTCCGGTCCTCTTGCTAGAGTTGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATACAAAATGCTATTGATGATTTGTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGTATATAGATCCTTTTACAATACAATCAAAGTACCAATATCCAAAAACTCTATTCAAGGTTATAAAAAGCTTCAAGCAGTTTTAAGGGCTATAATGTTACGCCGTACAAAAGGAACATTGATTGATGGAGAACCTATAATCAGTTTGCCCCCTAAAACAATTCAGCTGAATAAGGTGGATTTCTCAATTGAGGAGCGAGCCTTCTACACTAAGTTGGAAGCAGATTCACGTACTCAATTTAAgGCATATGCTGCTGCTGGTACAGTCAATCAAAATTACGCAAATATTCTTTTAATGCTTTTACGTCTCCGACAGGCTTGCGACCACCCACTTCTTGTTAAAGATTATAGTTCTGATTTTGTAGTACAACAGAGTAATTACAGTTCATCTAAAATCAGAGCGCTCCTTGAGATTCTACAGCTACACTGTAAATTAAACAATCCGAGTTCTGGCCAAGTGAGTTCCTCGGGATGCTTTAGAAATTCACAGTCCTCTGAAACTTCAGATCATGAAAATTCTGATCCAGATGTTAGTGTTACACGGAAGACAAGAAAATATTCAGAGAGCACAACTGAAGGACCAATAAAGACTATTGTTTTTTCCCAGTGGACTAGTATGTTGGACTTAATTGAAGATTCACTGAAGGATTCTGGTATTCAATACAGGAGACTTGATGGTACCATGACGTTGGTTGCAAGGGATAAATCTGTTAAGGATTTCAATACTGATCCTGAGGTAACTGTCATGTTGATGTCACTAAAAGCAGGAAATCTTGGTTTGAACTTGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCGACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACCCGTCCTGTTACGGTGACGCGGCTCACTGTAAAAGATACAGTTGAAGACAGAATACTGGATCTCCAGgaagagaaaagaaaaatggttgCATCTGCTTTTGGCGAAGATCAAGCTGGCGGTTCTGCAATGCGCCTTACAGTTGATGATCTGAAATATCTTTTCATGGTCTAA 1827 0.3881 MLQKETRSLHCMGGILADDQGLGKTISMIALIQMQRSLQSKSKTDDNCNHKTEALNLDEDDDNGGDKVEKSKDNEESDDIKPTLESVSSTSTSTLVVCPASVLRQWARELDDKVGDEAKLSVLVYHGGTRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEEDEIDEKNVEKFGSRKSKKGKRGTDSSFDCASGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIDDLYSYFRFLKYDPYAVYRSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGEPIISLPPKTIQLNKVDFSIEERAFYTKLEADSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYSSDFVVQQSNYSSSKIRALLEILQLHCKLNNPSSGQVSSSGCFRNSQSSETSDHENSDPDVSVTRKTRKYSESTTEGPIKTIVFSQWTSMLDLIEDSLKDSGIQYRRLDGTMTLVARDKSVKDFNTDPEVTVMLMSLKAGNLGLNLVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRLTVKDTVEDRILDLQEEKRKMVASAFGEDQAGGSAMRLTVDDLKYLFMV 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0224 608 MobiDBLite consensus disorder prediction 426 447 - -
Sto11g0224 608 Gene3D - 2 53 IPR038718 -
Sto11g0224 608 Gene3D - 309 607 IPR027417 -
Sto11g0224 608 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 1 384 - -
Sto11g0224 608 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 381 607 - -
Sto11g0224 608 Gene3D - 77 172 IPR038718 -
Sto11g0224 608 Gene3D - 182 295 IPR038718 -
Sto11g0224 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 294 IPR027417 -
Sto11g0224 608 CDD SF2_C_SNF 451 560 - -
Sto11g0224 608 MobiDBLite consensus disorder prediction 40 86 - -
Sto11g0224 608 CDD DEXDc_SHPRH-like 3 294 - -
Sto11g0224 608 MobiDBLite consensus disorder prediction 407 425 - -
Sto11g0224 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 437 603 IPR001650 -
Sto11g0224 608 MobiDBLite consensus disorder prediction 407 447 - -
Sto11g0224 608 MobiDBLite consensus disorder prediction 43 82 - -
Sto11g0224 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 5 256 IPR014001 -
Sto11g0224 608 Pfam Helicase conserved C-terminal domain 453 550 IPR001650 -
Sto11g0224 608 SMART helicmild6 467 550 IPR001650 -
Sto11g0224 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 607 IPR027417 -
Sto11g0224 608 Pfam SNF2-related domain 10 371 IPR000330 GO:0005524|GO:0140658
Sto11g0224 608 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 381 607 - -
Sto11g0224 608 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 384 - -
Sto11g0224 608 SMART ultradead3 2 273 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0224 Sto-Chr11 2863343 2877598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0224 380 508 RAD5 or RAD16-like Gene Family AT1G50410 46.512 1.72e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto11g0224 SNF2_N 1.6e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0224 - - ahf:112712269 904.434