Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0141 ATGTCTTCCACCGGCGGCAGCGATCATGGTGGCGGAACGAAACCATTTTATTGCCACAAATGCGAATGCAGAGTCAATGTACCTATCGAGGATTCGTCCGACCCTTTCTGTCCAATCTGCTTGCAAGGCTTTCTTGAAGAACAATtggaaaaccctaaccctaaccttttTGCAGACACAGAGCCTTTTGGCTTTGATCCTTTTTCTCTCCTCCCCCTCCTCTTGTCCTCTGCTTCTCGCTCCAGAAATCAACCCGATTTTGACGATTCCGACATATTCGATCCCGTTAATTTCCTCCAGAACCACCTTCGAGATCTTCAGGCTGATGGGGCTAACGTTCAATTCGAGATTAATCATCCTTATGAACAAGGGTTTCGGCTACCCAACAACATTGGCGATTACTTTCTTGGTCCTGGCCTGGAGCAACTGATTCAGCAGCTTGCTGAGAACGATCCAAACCGTTATGGCACTCCACCTGCCTCGAAATCTGCCATACAGAATCTTCCAACTATCACTGTCACTGATGAATTGTTGAACTCAGAAATGAACCAGTGTGCGGTTTGTCAGGATGAGTTCGAGAAGGGTTCCCAGGTAAGGCAAATGCCTTGCAAGCATGTGTACCATGATGGGTGCCTGCTTCCTTGGCTTGAATTGCATAACTCTTGCCCGGTTTGTCGATATGAGTTGCCCACCGACGACCCGAATTATGAGAATCCAGCGCATAGGGCTCAGGGGAATGCTAATGCGGGATGGAGATCTCTTGGAAGTGCCAGCAGTAGCGGAGGGGGCAGCAGACCGGTTCAGAGGACTTTTAGAATATCCTTGCGGTATCCTTTTGGCTCACGTGAATCTTCTCAGGAGAATAGCGAGAGAGGATGGGGAAAAATTGGAAAGATATCCATGTCAATTGTTCCTCTAAATGGTTGCTGGGTTCTGCCTGCCTCTATACACGTTAACATATTGAAGAAGgaataa 975 0.4656 MSSTGGSDHGGGTKPFYCHKCECRVNVPIEDSSDPFCPICLQGFLEEQLENPNPNLFADTEPFGFDPFSLLPLLLSSASRSRNQPDFDDSDIFDPVNFLQNHLRDLQADGANVQFEINHPYEQGFRLPNNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKSAIQNLPTITVTDELLNSEMNQCAVCQDEFEKGSQVRQMPCKHVYHDGCLLPWLELHNSCPVCRYELPTDDPNYENPAHRAQGNANAGWRSLGSASSSGGGSRPVQRTFRISLRYPFGSRESSQENSERGWGKIGKISMSIVPLNGCWVLPASIHVNILKKE 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0141 324 PANTHER OS06G0101300 PROTEIN 11 289 - -
Sto11g0141 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 11 289 - -
Sto11g0141 324 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Sto11g0141 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Sto11g0141 324 Pfam Ring finger domain 183 226 IPR001841 -
Sto11g0141 324 SUPERFAMILY RING/U-box 164 236 - -
Sto11g0141 324 CDD RING-H2_RNF126_like 184 226 - -
Sto11g0141 324 MobiDBLite consensus disorder prediction 236 267 - -
Sto11g0141 324 MobiDBLite consensus disorder prediction 249 267 - -
Sto11g0141 324 Pfam zinc-ribbon 16 47 IPR039525 GO:0061630
Sto11g0141 324 SMART ring_2 185 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0141 Sto-Chr11 1791812 1793778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0141 130 237 C3H Transcription Factor Family AT5G01980 47.222 1.49e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0141 K11982 - gmx:100785289 351.673