Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0138 ATGGAGAATAACACCACTAACGCCAACAACGCCAAACTAGGTTCAGGCGGAACCAAGCCACTCAATGACAACGAGGAGCGTTCTAATTTGAATGAAGGCGAACACAAAGAAGAAGATGTGATGGATGCTCATGAAAATGGAACccaagatgaagatgaaggagACGAAGAAGAAAGAGCTGGATCTGGCTCCGTTCGCTCTCCTTCTCGCCACCCTTCCAGAACACCTTTCACTAATCTCAGTCAGGTCGATGCTGACCTCGCCCTTGCTAGAACCCTTCAAGAGCAGggtttcggattttgtATTCGTTTCGAGTTTTATGCTCCCTTTTGTTGGGAAAGGGCATACATGATGCTGAGAATGAACAACGAAGGAAGTGATTATGGAAGTTGGGAGGCTGGAAGCTATTTGCATGATGATGGGGATGATTTTGAAGATCTACATGGCGGCACTGAtgcagatgatgatgatgatgacaaccatgatgatgatgatgatgaggatgaggacgatgatgaagaagaagaagaagaagaatatgaagatgaagatgcatTTGATGCCCATGCTCATGATAGTTCTGGGGAAATTGATAATACCAGCATTGAATTTGATCCGGATGTATTCTCAAGTGATGAAGCCTATGCAAGAGCATTACAAGAGGCTGAAGAGAGGGAAATGGCCGCTAGACTCTTAGCTTTGGCTGGGATAAATGATCGCGAAGCTGAGGACACAGAGGACCATGGTGCTAATTCTCAAGATGCATGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAACTACTGGCCCTTGGTGAAGTTGTCGGGACTGAGAGCAGAGGTCTTTCTACTGATACTATTGCTTCTTTGCCTTCAGTCAACTACAAAATGGGAAGTGATCAACATGGAAATAATGATTCGTGTGTCATATGCCGGATGGATTATGAGGATGGTGAATCTCTGACTGTTCTTTCTTGCAAACATCTGTACCATCCTGAATGCATTAACAATTGGTTGAAAATAAACAAGGTATGCCCTGTTTGCAGTGCTGAAGTATCAACATCCGGGAGCAGCTTGTAG 1083 0.3934 MENNTTNANNAKLGSGGTKPLNDNEERSNLNEGEHKEEDVMDAHENGTQDEDEGDEEERAGSGSVRSPSRHPSRTPFTNLSQVDADLALARTLQEQGFGFCIRFEFYAPFCWERAYMMLRMNNEGSDYGSWEAGSYLHDDGDDFEDLHGGTDADDDDDDNHDDDDDEDEDDDEEEEEEEYEDEDAFDAHAHDSSGEIDNTSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREAEDTEDHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIASLPSVNYKMGSDQHGNNDSCVICRMDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSAEVSTSGSSL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0138 360 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Sto11g0138 360 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 25 358 - -
Sto11g0138 360 CDD RING-H2_PA-TM-RING 309 349 - -
Sto11g0138 360 SMART ring_2 309 349 IPR001841 -
Sto11g0138 360 MobiDBLite consensus disorder prediction 44 58 - -
Sto11g0138 360 MobiDBLite consensus disorder prediction 1 24 - -
Sto11g0138 360 MobiDBLite consensus disorder prediction 239 260 - -
Sto11g0138 360 MobiDBLite consensus disorder prediction 25 43 - -
Sto11g0138 360 MobiDBLite consensus disorder prediction 239 255 - -
Sto11g0138 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 356 IPR013083 -
Sto11g0138 360 MobiDBLite consensus disorder prediction 1 78 - -
Sto11g0138 360 SUPERFAMILY RING/U-box 300 355 - -
Sto11g0138 360 MobiDBLite consensus disorder prediction 141 206 - -
Sto11g0138 360 Pfam Ring finger domain 307 349 IPR001841 -
Sto11g0138 360 MobiDBLite consensus disorder prediction 146 185 - -
Sto11g0138 360 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 25 358 IPR043312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0138 Sto-Chr11 1764593 1772456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0138 185 353 C3H Transcription Factor Family AT3G63530 40.571 4.93e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0138 K19045 - gmx:100306465 437.573