Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0112 atgctctctctctctgctaTGATTTCTGGTCTCGTCCCCCTTCCCTTTGGTTTGATGTCTTCTGCCGGCGGCGATGGCGGAGGTACCGGCGGTGGAAGTGTCGAATCAAGCTCCtcacaaaaccccaaatcaaGCTCCATGAGTTTAGCCTTTGTTTTCTTATCTTCTTTCCAACTCTCTTGTTCTGCTCCATCTTCCAACCGTCACCGTCGCAATCGGAGCCGCCGTCGTCGCCATCGCAAATCTGAGGAAAAGGCAGCAGCAGCTGACGTTGAGGCAGTGGACTTCGAGCCGGAGGACGATGACTTGATGGACGACGACGGCGGAGTTCCCGATGGCTCCGCCTCTCCCGGTGCCCCTCCTCTCCCTAAGCTCAAATCTGCCATCACTGGCGGCGCTGCATCTCGCTCACTCGCTGCCCCTAAGAAGACCAAAGGTCGTGGTTTCCGTCATAATTCGGATGCCGATCGTAACAATCGCTTTACTGGCTCCGAGTTCGACTCTCTTACTACCGAGGGTGGTCCTGGTCCTCAACGATCCATTGAAGGATGGATTATTTTGGTCGCTGGGGTGCACGAGGAAGCTCAAGAGGATGATCTGCAAAATGCATTTGGTGAATATGGAGAAATTAAGAATCTGCATTTGAATCTTGATCGTCGCACTGGTTTTGTCAAGGGTTATGCTCTGATTGAATATGAACATGCTGAGGAAGCCAGGAATGCAATAGAGAACTTGAATGGATCTGAACTTCTTACACAAACCATTTATGTTGATTGGGCTTTCAGCAGCGGACCTATTAATGCATCAATCAGAAGAAAGAATGTTAGGTATGTATCTAAATAA 843 0.4781 MLSLSAMISGLVPLPFGLMSSAGGDGGGTGGGSVESSSSQNPKSSSMSLAFVFLSSFQLSCSAPSSNRHRRNRSRRRRHRKSEEKAAAADVEAVDFEPEDDDLMDDDGGVPDGSASPGAPPLPKLKSAITGGAASRSLAAPKKTKGRGFRHNSDADRNNRFTGSEFDSLTTEGGPGPQRSIEGWIILVAGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYEHAEEARNAIENLNGSELLTQTIYVDWAFSSGPINASIRRKNVRYVSK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0112 280 PANTHER RNA-BINDING PROTEIN 8A 87 275 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto11g0112 280 MobiDBLite consensus disorder prediction 93 108 - -
Sto11g0112 280 MobiDBLite consensus disorder prediction 68 82 - -
Sto11g0112 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 255 IPR000504 GO:0003723
Sto11g0112 280 SMART rrm1_1 185 258 IPR000504 GO:0003723
Sto11g0112 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 262 IPR000504 GO:0003723
Sto11g0112 280 Gene3D - 133 270 IPR012677 -
Sto11g0112 280 MobiDBLite consensus disorder prediction 147 161 - -
Sto11g0112 280 MobiDBLite consensus disorder prediction 61 175 - -
Sto11g0112 280 MobiDBLite consensus disorder prediction 31 45 - -
Sto11g0112 280 PRINTS RNA binding motif protein 8 family signature 138 150 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto11g0112 280 PRINTS RNA binding motif protein 8 family signature 175 189 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto11g0112 280 PRINTS RNA binding motif protein 8 family signature 231 247 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto11g0112 280 PRINTS RNA binding motif protein 8 family signature 249 261 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto11g0112 280 SUPERFAMILY RNA-binding domain, RBD 177 268 IPR035979 GO:0003676
Sto11g0112 280 PANTHER RNA-BINDING PROTEIN Y14A-LIKE 87 275 - -
Sto11g0112 280 MobiDBLite consensus disorder prediction 23 45 - -
Sto11g0112 280 CDD RRM_RBM8 178 265 IPR033744 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0112 Sto-Chr11 1454569 1459302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0112 186 260 Eukaryotic Initiation Factors Gene Family AT4G34110 37.333 3.66e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0112 K12876 - gmx:100527187 285.804