Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0098 ATGCACTTATACAAGATTAATTTCCAGTATTCTACTATCGTTAAACTTCTGGAAGATGACATAGATATTCCAACTTATGGGTTCAATTTCATCCCATTTTCTGATATTACTTCCCAAACTCACGATGATGGTTGTTTGGTTGATGTCATTGGTCATCTTACTGGAAAAAGCGACGTCCAAGAACTAAATAGAGATGGTAAAGGTTCAAAGCTTATAAACATTGAGTTGACGGATTTGGAgtTAGGACCAAATGATGGTAGTTACTCATTAAATCTTTCTCAGATATCTAATACTTCCAGTGTTACGATTGAAGAGGACTTGCTTAATATAACAGTGCCCAAAAAGATTGTTGACCTTTCACGTTCTTCCAATGATAGTACTTCTTGTGTCATACTTGCAACTGTTCTTGGCATTGGTACAAACAAGGGATGGTATTACAACTCATGCAAGAAATGCACCAAAAAAGTTATTCCTGATGGGAGTTCATTCATTTGTGAAAAGTGTCAAAATATTGTAAGCTCTGTTATACCAAAGTTCAAGCTTGAGTTGAAAGTTGTTGATGACACTGGAAGTGTTGTTTTAATTCTTTTCGATCGTGAAGTTTATCAATTTCTTGGGTCCTCTGCTATTGAATTGCTACAAGGATTAGTTGTTgattttggagATACCTCTTCTGTACCTGATAGACTTGATGAATTTTTGGGGAAGAagtttttattcaaattgaagATTAAGGATGACAGATTTTCATATTTTGATCCCAAGTATATAGTCATGAGAATGTCTGATAGGGAATCCTTGATTGAACAATACAACCGCAACAAAGATGACATCCAGCAATCTCCATGTTCCAATACTACCCCTGTTCTGTCTGAGTTTCATAAGGAATCTGGGACTATTGATCTTGAAGCTTCTTCTGATCATTGCATCACTCCTGTCAAGAGAACTTCTACAGCTTATTATGATGATTCATCTCCATCCATTATCGAAATCCCTTCTGAAACTTCCTCCAACAAATATAGGAAGATTATTAAAGAAGAAGACCAATGA 1050 0.3476 MHLYKINFQYSTIVKLLEDDIDIPTYGFNFIPFSDITSQTHDDGCLVDVIGHLTGKSDVQELNRDGKGSKLINIELTDLELGPNDGSYSLNLSQISNTSSVTIEEDLLNITVPKKIVDLSRSSNDSTSCVILATVLGIGTNKGWYYNSCKKCTKKVIPDGSSFICEKCQNIVSSVIPKFKLELKVVDDTGSVVLILFDREVYQFLGSSAIELLQGLVVDFGDTSSVPDRLDEFLGKKFLFKLKIKDDRFSYFDPKYIVMRMSDRESLIEQYNRNKDDIQQSPCSNTTPVLSEFHKESGTIDLEASSDHCITPVKRTSTAYYDDSSPSIIEIPSETSSNKYRKIIKEEDQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0098 349 Gene3D - 96 275 IPR012340 -
Sto11g0098 349 SUPERFAMILY Nucleic acid-binding proteins 123 263 IPR012340 -
Sto11g0098 349 Pfam Replication factor-A C terminal domain 133 250 IPR013955 -
Sto11g0098 349 PANTHER BNAC07G49340D PROTEIN 2 67 - -
Sto11g0098 349 PANTHER BNAC07G49340D PROTEIN 55 326 - -
Sto11g0098 349 SUPERFAMILY Nucleic acid-binding proteins 28 78 IPR012340 -
Sto11g0098 349 PANTHER REPLICATION FACTOR A 1, RFA1 2 67 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto11g0098 349 PANTHER REPLICATION FACTOR A 1, RFA1 55 326 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto11g0098 349 Gene3D - 21 85 IPR012340 -
Sto11g0098 349 CDD RPA1_DBD_C 122 215 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0098 Sto-Chr11 1326642 1328633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0098 145 260 Core DNA Replication Machinery Family AT5G08020 26.496 2.28e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0098 - - vun:114169438 144.436