Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0049 ATGAATCTCCCAGCAGGTGTCCTTGATGTGACCCTTCTTGTGACAGTGATCACAATATTTAGCAGTAGGGACGCCTTGTCGCTGAAGCTGTTGTATCGGTCCTCTAGTAGAGTGGCGTCAGAATACTGGAAGGAAGAAGTCGCCACTGTTGGAGCGTGTTCTGGGGTAGAAGACGAGCTGTCCACGGCGGAAGTCATGGTGCCAAACACGATGGTATCAATATTGACATGGGAAGAGGGAATGCCACGTCCATGCCAGAATTATTCAGTTTGCATTGACCCATCATCTGCTCTTATGCGGAATCCTTTTTCAGAAAAGAAATGGAGGAAGTTCCAAATATCAAGACTGTTTAGCAGCTCCAATGCTGCTATTAAGATGCAGTTAATAGATGTGACTTCATATTCTGAAGGAACTACAACGGTTGATCGGTGGCTTCTTGTACTCAGCCTGGGTTCTGGGCAAACAAGAAATATGGCTCTTGATAGGCGATATCTTGCTCACAACTTGACTCCTGTTGCTGGAATTGCTGCACTTATATCAAGAAATGGTCATCATGCCAATGTTTCCTCATTGAGCTGCATTATGTCCCCTCTTCCTTTGTCTGGTTGTGTAAATATGCCTGTTACTGTTCTAGGATGTTTCCTTGTGTGTCACAACAGGGGTCGTTATCTCTTTAAATACCAAAACAGGGAAACATCAGCAGAGGCACCCTTCGATGCTGGAAATCAATTAATTGAATCTTGGAACAGAGAGCTGATGTCTTGTGTTTGTGATTCCTATGTTGAAATGATTTACGAAATGCAAAAGTTAAGAAAAGATGTTTCAAGTTCTTCTTTTGATTCAAGTGCCTCTCTTGCAATCAATCTCTATATGAAGGCTTATGGAGATCAGATATATTCCTTTTGGCCACGTTCTGAAGGGAGTGTTCTGAGTGATCAACTTGGTGATTCGAATACCATGCCTGCATGTTCATCAGCAATTCTCAAAGCAGACTGGGAATGCCTTAAAGAACGGGTAATACATCCATTTTATTCTCGTATTGTTGACCTTCCAGTGTGGCAACTATACTCTGGAAATTTAGTCAAGGCTGAAGAAGGCATGTTCCTTTCACAACCTGGGAATGGGATGATTGGTACTTTACTTCCAGCTACAGTTTGTAGTTTTGTTAAGGAGCATTATCCTGTATTTTCAGTACCATGGGAATTGGTAAATGAAATCCAAGCTGTGGGTTTTCCTGTTCGAGAAATTAGACCAAAAATGGTTCGTGACCTCCTAAAAATTTCTTCAACCTCTATAGTTCTGAGATCAGTTGACATGTATATAGATGTTCTTGAATACTGCTTGTCAGATTTGCAGCAAACAGGATCATTCAGCTTGTCCAGAGATGATGCATCAATTGATCCTGTTAATATTAATGCTGTTTGCCGACAAACTAATATTGTCAGAAGCAGTTCTCATCCAGAGTCTAATATGCATGGCTCTATTGGCTTAGCCCACCAGGGCGCAGCCAGTTCAGGAGATGCACTTGAAATGATGACAAGTTTAGGGAAGGCTTTATTTGATTTTGGTCGTGGTGTTGTTGAAGATATTGGTAGAGCAGGAGGACCCCTGGTTGACAACAATGCTGTATTAGGCAGCAATCAAAATAGGGACCCGAAGGTTATATCCATTGCTGCAGAACTCAAAGGATTACCATGTCCAACTGCAACTAACCACTTGATTAAGTTGGGCTTTACTGAACTTTGGCTTGGGAATAAGGAGCAACAGTCACTAATGATTCCTTTAGCAGCAAAGTTCATGCATCCTAAAGTATTAGACAAACCAATCTTGGGTGAACTTTTCTCTAACTTTCCCATTCAAGCACTACTGAAGTTACAGAACTTCTCTCTTCACCTTCTGGCCAATCATATGAAACTAATTTTCCACAAAGATTGGGTGAACCATGTAATTGGCTCAAATATGGTTCCATGGATTTCATGGGAGAAACTACCAAGTTCTGGTTATCAAGGGGGTCCATCCCCTGAATGGATTAGAGTATTTTGGAAAACTTTCAGCGGTTCACTAGAAgatctttctcttttttcagGTTGGCCCCTCATTCCTGCTTTTCTTGGTAGGCCGGTTTTATGCCGTGTAAGAGAGCGACATCTGGTCTTCATTCCGCCTAGTTTGGAGTATGCAACATTGACAAGTAATATTTTAGAAAGAGAAGCAACTGTCAGTTCTGGGGATGATACATCTGAAGCTCAGTTAATTGAATCCTACATTTCTGCTTTTGAAAGATCCAAAATTAGTTATCCTTGGTTGTTTCCTCTGTTAAACCAGTGTAATATACCCATATTTGATGTATCATTAATGGATTGTGCAGCATCATGCAATTGTTTTCCTATGCCTGGTCAATCACTTGGCCAAGTTATTGCATCCAAACTTGTGGCAGCTAAGCAAGCTGGATATCTCTCTAAACCTACCGGTATCCCCAGTTCCAATTGTGATGAGCTTTTTTCACTTTTTGCTAACGAATATTCAAATGGATCCAGCTATACACGGGAGGAAATTGAAGTTTTACGTTCTCTGCCTATATATAAAACAGTTGTTGGGTCCTATACTATGTTGCAAGGTCAAGACCAGTGTATTATCCCTTCACGGTCGTTTCTTAAACCATATGATGAGCATTGTCTTTCTTATGCCATGGATTCAGATGAAAGTTCATTTCTTCGAGCCCTTGGGGTGCTGGAGTTGCATGACCAACAGATCTTAGTGCGCTTTGGCTTGCCTGGCTTTGAGAGGAAACCTCAGAATGAGCAGGAGGACATTTTGTTATATCTTTATACCAATTGGCATGATCTTCAAGCAGATCAATTAGTAGTTGAAACTTTAAAGGAAACTAAATTTGTGCGTAACTCTGATGAATTTTCAACAGATCTCTTAAAGCCTAAGGAACTTTTTGATCCTGGCGATGCTCTATTAATATCCATTTTCTCTGGTGAGAGAACAAAATTTCCTGGAGAAAGGTTTAGTACAGATGGGTGGCTCCGAATATTAAGGAAACTTGGCCTTCGAACTGCTATTGAAGTAGATGTAATACTTGAGTGTGCTAAAAGAGTTGAGTTTCTTGGAAATGAGTGCTTGAAGTCAGGTGATTTGGATGATTTTGAGACAGATGTGACCAATTTGAGAACTGAAGTTTCAATGGAAGTATGGGCATTAGCAGGATCTGTTGTTGAATTTGTTTTCTCAAACTTCGCTATTTATTTTAGCAACAACTTCTGTGATACTCTTGGCAAGATTGCATGTGTACCTGCTGAGTTGGGGTTTCCAAGTGTTAATTGCAGGAGGGTACTTACTTCATATAGTGAAGCTATTTTGTCAAAGGATTGGCCTCTAGCTTGGAGTTGTGCTCCTATTCTTTCTAGACAGCAGATTGTTCCTCCAGAGTATTCTTGGGGAGCTCTCCATTTAAGGAGTCCTCCATCCTTTTCCACTGTTCTAAAGCACCTTAAAGAAATTGGAAAAAATGGAGGTGAAGATACTCTTGCTCACTGGCCCATTGCATCAGGAATGAATATTGAGGAATGTACTtgtcaaattttgaaatatCTAGACAAAGTTTGGGGTTCCCTTTCTTCCTCAGAGCTGCTTGGATCCTCAgtgtttctttctttcattatttTGTTACTGTGCCATCATGAAAAGCTCTATGTGGTTGAGCTACAGAGAGTGGCATTTCTGCCTGCTGCAAATGGAACACGCCTGGTGACTGCTGATGCTCTTTTTGTGCGTTTGATAATCAACTTGTCTCCATTTGCTTTTGAACTTCCTACAGTATACCTACCATTTGTGAAGATTCTTAAAGATTTGGGTCTTCAGGAGACACTAACACTTACTTCTGCAAAGGATCTTCTTCTCAATCTTCAGAAATCTTGTGGATATCAGCATTTAAATCCAAATGAGCTACGTGCTGTGAtggaaattttgaattttataagCGATCAGATTATTGAGGGGAACACAGTTGATAGGTCAAGCTGGAAATCAGAAGCCATAGTTCCTGATGATGGCTGCAGACTCGTTCATTCAGGATCATGTGTCTATGTTGATTCATATGGTTCCCGATATGTCAAATGCATTGACATATCCAAAATTAGATTTGTTCACCCAGATCTTCCTGAGCGAGTATGTAGTGTCCTGGGCATCAAGAAATTGTCTGAAGTTGTCAATGAGGAACTGGATGAAAATGAGCAGTTAGAGACCTTAGAATCCATTGGGTCTGTTTCACTGGTGACTATCAAACAGAAGTTATCAAGTAGCTCACTTCAGGTTGCTGTATGTACTGTTGTTAATAGCTTGGGCAGTTACATTCCTGCACTTAATAACCTTGCATTGGATACAATACAGTCCTTATTGAAATCAACTGCTGAAAAACTGCAATTTGTTAAGAATCTTAAAACGAGGTTTTTGCTTCTGCCCAAGTTAGTCGATATTACTCGTGCAGAAAAAGATTTCATCATACCAGAGTGGAAGGGTGAATCTGCACATCAGACTCTTTATTTTGTGAACCAATCAAGATCCTGTATTCTAGTTGCAGAACCGCCAACTTACATATCAATTTTTGATCTCATTGCTGTTGTTGTCAGCCAGGTTCTAGGCTCTCCTACTGTATTGCCTCTTGGATCCTTGTTTGTTTGCCCTGATGGATCTGAGATTTCAATTGTCAATGTCTTAAAACTTTGCTCTGACAAGAAAGAAGTTATTCCCATAAATGGAAGCAGTAATTTAGTGGGGAAAGAGATATTGCCCCAAGATGCTCGTCTTGTGCAGTTCCATCCATTGAGACCCTTCTATTCAGGAGAAATAGTGGCTTGGCGGTCACAAAATGGGGAAAAGTTAAAATATGGAAAAGTTCCTGAGGATGTCAGACCATCAGCAGGCCAAGCTCTATACAGATTTAAGATTGAAATTGCGCCAGGTGTTACACAAGTTTTACTTTCTTCCCaagttttttcatttaaaagtaTAGCAGCAAGCAGTCCTCTATCAGAAACCTTGGTGGATGATAGCCATGTAGTAAGCAGCAAGAGGCCTAATGTTGAGGAGCCAGAGAGTTCGAGAAGGGGCAAAAGCAGCTCTCAGCCTTCAAGAGAAATCCAGCATGGCAAAGTTTCAGCTGCAGAACTGGTGCAGGCAGTTAATGAAATACTCTTTACTGCTGGAATCAATATGGATGTGGAGAAGCAGGCTCTACTTCAGAGAACAATAGCATTGCAAGATAATCTTAGAGAATCTCAAGCAGCACTTCTATTGGAGCAGGAGAGGGTTGAAGCTGCAACAAAAGAGGCTGATACAGCTAAAGCAGCGTGGCTTTGTCGAGTTTGTCTGACTGCGGAAGTTGATATCACAATTGTGCCTTGTGGTCATGTACTTTGTCATAGATGCTGTTCTGCAGTGTCTAAGTGTCCATTTTGTCGGCTTCAGGTTACCAAAACTATTCGAATTTTCCGTCCATAG 5505 0.4045 MNLPAGVLDVTLLVTVITIFSSRDALSLKLLYRSSSRVASEYWKEEVATVGACSGVEDELSTAEVMVPNTMVSILTWEEGMPRPCQNYSVCIDPSSALMRNPFSEKKWRKFQISRLFSSSNAAIKMQLIDVTSYSEGTTTVDRWLLVLSLGSGQTRNMALDRRYLAHNLTPVAGIAALISRNGHHANVSSLSCIMSPLPLSGCVNMPVTVLGCFLVCHNRGRYLFKYQNRETSAEAPFDAGNQLIESWNRELMSCVCDSYVEMIYEMQKLRKDVSSSSFDSSASLAINLYMKAYGDQIYSFWPRSEGSVLSDQLGDSNTMPACSSAILKADWECLKERVIHPFYSRIVDLPVWQLYSGNLVKAEEGMFLSQPGNGMIGTLLPATVCSFVKEHYPVFSVPWELVNEIQAVGFPVREIRPKMVRDLLKISSTSIVLRSVDMYIDVLEYCLSDLQQTGSFSLSRDDASIDPVNINAVCRQTNIVRSSSHPESNMHGSIGLAHQGAASSGDALEMMTSLGKALFDFGRGVVEDIGRAGGPLVDNNAVLGSNQNRDPKVISIAAELKGLPCPTATNHLIKLGFTELWLGNKEQQSLMIPLAAKFMHPKVLDKPILGELFSNFPIQALLKLQNFSLHLLANHMKLIFHKDWVNHVIGSNMVPWISWEKLPSSGYQGGPSPEWIRVFWKTFSGSLEDLSLFSGWPLIPAFLGRPVLCRVRERHLVFIPPSLEYATLTSNILEREATVSSGDDTSEAQLIESYISAFERSKISYPWLFPLLNQCNIPIFDVSLMDCAASCNCFPMPGQSLGQVIASKLVAAKQAGYLSKPTGIPSSNCDELFSLFANEYSNGSSYTREEIEVLRSLPIYKTVVGSYTMLQGQDQCIIPSRSFLKPYDEHCLSYAMDSDESSFLRALGVLELHDQQILVRFGLPGFERKPQNEQEDILLYLYTNWHDLQADQLVVETLKETKFVRNSDEFSTDLLKPKELFDPGDALLISIFSGERTKFPGERFSTDGWLRILRKLGLRTAIEVDVILECAKRVEFLGNECLKSGDLDDFETDVTNLRTEVSMEVWALAGSVVEFVFSNFAIYFSNNFCDTLGKIACVPAELGFPSVNCRRVLTSYSEAILSKDWPLAWSCAPILSRQQIVPPEYSWGALHLRSPPSFSTVLKHLKEIGKNGGEDTLAHWPIASGMNIEECTCQILKYLDKVWGSLSSSELLGSSVFLSFIILLLCHHEKLYVVELQRVAFLPAANGTRLVTADALFVRLIINLSPFAFELPTVYLPFVKILKDLGLQETLTLTSAKDLLLNLQKSCGYQHLNPNELRAVMEILNFISDQIIEGNTVDRSSWKSEAIVPDDGCRLVHSGSCVYVDSYGSRYVKCIDISKIRFVHPDLPERVCSVLGIKKLSEVVNEELDENEQLETLESIGSVSLVTIKQKLSSSSLQVAVCTVVNSLGSYIPALNNLALDTIQSLLKSTAEKLQFVKNLKTRFLLLPKLVDITRAEKDFIIPEWKGESAHQTLYFVNQSRSCILVAEPPTYISIFDLIAVVVSQVLGSPTVLPLGSLFVCPDGSEISIVNVLKLCSDKKEVIPINGSSNLVGKEILPQDARLVQFHPLRPFYSGEIVAWRSQNGEKLKYGKVPEDVRPSAGQALYRFKIEIAPGVTQVLLSSQVFSFKSIAASSPLSETLVDDSHVVSSKRPNVEEPESSRRGKSSSQPSREIQHGKVSAAELVQAVNEILFTAGINMDVEKQALLQRTIALQDNLRESQAALLLEQERVEAATKEADTAKAAWLCRVCLTAEVDITIVPCGHVLCHRCCSAVSKCPFCRLQVTKTIRIFRP 1834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0049 1834 MobiDBLite consensus disorder prediction 1686 1704 - -
Sto11g0049 1834 ProSiteProfiles Zinc finger RING-type profile. 1788 1822 IPR001841 -
Sto11g0049 1834 SMART ring_2 1788 1821 IPR001841 -
Sto11g0049 1834 PANTHER - 71 1834 - -
Sto11g0049 1834 SUPERFAMILY RING/U-box 1786 1829 - -
Sto11g0049 1834 Pfam Zinc finger, C3HC4 type (RING finger) 1787 1827 - -
Sto11g0049 1834 MobiDBLite consensus disorder prediction 1685 1714 - -
Sto11g0049 1834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1764 1833 IPR013083 -
Sto11g0049 1834 Coils Coil 1398 1418 - -
Sto11g0049 1834 Coils Coil 1758 1778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0049 Sto-Chr11 646431 658491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0049 1744 1832 C3H Transcription Factor Family AT1G73950 31.111 7.69e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0049 - K17592 gmx:100818243 2713.33