Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0039 ATGGCTGCCGACGACACTGCTGGTTCTTTTGTGACCAGCAACGTTACAGCAACTAATGACAGCTGGACAGATGCTACTCCAGTCCTAATTACTGGTCACAAGCTCAACGGCCACAATGCAGTAACGGCTATGGTTTCTGATCCTACTTCAGCACATGTTGCCCAATCAGATAGATGTGAACCCATACAACAGTCCCAAAACACTCGAGACAGCCTTGAACCCATACAACAGTCCCAAAACACACAAGATAAAATATTTGGCATAGTTTACACCAGATGGCAAGAAACCCAAGAAAAAGAGACAACTCCGATGATGCAAATCCATGATTCCTTGCCAAGTCCCACTGAGCCTGAGAGCACTAGTGAGGGGCTGAATCTTCCTATTGCACTAAGGAAAGGAGTTTCAGAAGAGAGCAAGGAGGCCCCTCATAAAAATGTGAAAGATGAGGAAATGGTTGATGCTCCTTCAACGGAGGAAACGGAAAAGGAACCTCCTAAAATGGCAGCTACTCTGAAAGAACAAAATGCCTCATCGAAGAAAATATTTGTTGGAAACTTGCCATATAGGGTGCCAAGGATTGATTTGGAAAATTTATTTGAAGATTGTGGAGAAATTGTTAAACTCAATTTGGCTACAGAGCATGATGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCCACCGAAGAAGCAGCACAAAAGGCCCTTAAGTTGAATGGGAGTGTACTGTGTAGACGTTCTATCAGGATTGAGAAAGCCCGTGAAAAGGGTGCATATAGTCCTAATACCAGGAATGAATCATTAAAGGGTTTTTACACATCATTTGGAGATGAGTGTAAATCGTCAGCTACCCTAAAAGAACAAAATACCACATCGAAGACATTATATGTTGGAAACTTGTCATTTAGTGTGGAAAAGACTGATTTggaaattttatttaaagattgtggagaaattgttgatatccGCCTTGCTACAGATCGTGAGGGGAGGTTTAAAGGCTTTGGACATGTTGAGTTTGCCACAGAAGAAGCGGCTCAAAATgGTCTTAAGTTTGATGGGTACGAACTGTTGAGACGTTCAATCAGGCTTGATTTAGCTCCTGAGAAGACTGCATATTCTTCCAATAGAAGCAATAGTAATGACTCATCCCAGACCGTTGGAGGCATTCATTCTCAAACGATATTTGTAAAGGGTTTTGACACATCATTAGGAGAAGATAAGaTAAAAACTAGCTTGAAAGAACATTTCAGTTCTTGCGGAATGATTTCAGGGATATCAATTGCAAGAGAATATGACTCTGGTGCTGCTAAGGGGTTCATCAGGTTGCATCTAGGCGTTTCATGGGATACTCTCGCCATCAGAAGGGATATGGGTGTTACTCTCCGGATCTCAATAGATATTTGGTATCGACTGATATTGTCTTTTTCGGAGAAAACACAATTCTTTTCCTCCCCACCCATCTCTATAGGTCTGGAAGAGGAAGATGAATGA 1494 0.4103 MAADDTAGSFVTSNVTATNDSWTDATPVLITGHKLNGHNAVTAMVSDPTSAHVAQSDRCEPIQQSQNTRDSLEPIQQSQNTQDKIFGIVYTRWQETQEKETTPMMQIHDSLPSPTEPESTSEGLNLPIALRKGVSEESKEAPHKNVKDEEMVDAPSTEETEKEPPKMAATLKEQNASSKKIFVGNLPYRVPRIDLENLFEDCGEIVKLNLATEHDGRFRGFGHVEFATEEAAQKALKLNGSVLCRRSIRIEKAREKGAYSPNTRNESLKGFYTSFGDECKSSATLKEQNTTSKTLYVGNLSFSVEKTDLEILFKDCGEIVDIRLATDREGRFKGFGHVEFATEEAAQNGLKFDGYELLRRSIRLDLAPEKTAYSSNRSNSNDSSQTVGGIHSQTIFVKGFDTSLGEDKIKTSLKEHFSSCGMISGISIAREYDSGAAKGFIRLHLGVSWDTLAIRRDMGVTLRISIDIWYRLILSFSEKTQFFSSPPISIGLEEEDE 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0039 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 248 IPR000504 GO:0003723
Sto11g0039 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 362 IPR000504 GO:0003723
Sto11g0039 497 SMART rrm1_1 180 251 IPR000504 GO:0003723
Sto11g0039 497 SMART rrm1_1 394 467 IPR000504 GO:0003723
Sto11g0039 497 SMART rrm1_1 294 365 IPR000504 GO:0003723
Sto11g0039 497 Gene3D - 128 266 IPR012677 -
Sto11g0039 497 PANTHER BNAA08G02930D PROTEIN 280 444 - -
Sto11g0039 497 PANTHER BNAA08G02930D PROTEIN 125 264 - -
Sto11g0039 497 CDD RRM1_NUCLs 294 370 IPR034349 -
Sto11g0039 497 SUPERFAMILY RNA-binding domain, RBD 172 264 IPR035979 GO:0003676
Sto11g0039 497 MobiDBLite consensus disorder prediction 134 174 - -
Sto11g0039 497 SUPERFAMILY RNA-binding domain, RBD 292 441 IPR035979 GO:0003676
Sto11g0039 497 MobiDBLite consensus disorder prediction 51 80 - -
Sto11g0039 497 Gene3D - 371 444 IPR012677 -
Sto11g0039 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 369 IPR000504 GO:0003723
Sto11g0039 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 255 IPR000504 GO:0003723
Sto11g0039 497 Gene3D - 276 370 IPR012677 -
Sto11g0039 497 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 125 264 - -
Sto11g0039 497 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 280 444 - -
Sto11g0039 497 MobiDBLite consensus disorder prediction 134 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0039 Sto-Chr11 507028 520550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0039 181 440 Eukaryotic Initiation Factors Gene Family AT4G34110 23.574 4.74e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0039 - K11294 aprc:113868402 278.485